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Release 0.18.0#2115

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dweindl merged 29 commits intomasterAMICI-dev/AMICI:masterfrom release_0.18.0AMICI-dev/AMICI:release_0.18.0Copy head branch name to clipboardMay 26, 2023

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Commits on May 11, 2023

• Python splines (#1515)

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Commits on May 12, 2023

• Run clang-format / cmake-format (#2083)

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• Add .pre-commit-config.yaml (#2042)

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• Run pre-commit run --all-files (#2082)

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Commits on May 13, 2023

• pre-commit: sort imports / update contrib doc (#2085)

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Commits on May 15, 2023

• Fix type in exception message

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Commits on May 16, 2023

• Update documentation stack / require sphinxcontrib-matlabdomain<0.19.0 (#2091)

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• Fix sensitivities for models with events / extend and cleanup event tests (#2084)

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• Model import: Don't create spl.h and sspl.h for models without splines (#2088)

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• Add test for events with state-dependent ddeltaxd{t,p,x} (#2092)

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Commits on May 17, 2023

• Fix .gitignore amici_models

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• SBML import: cleanup _gather_base_locals (#2095)

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• SBML import - faster _get_list_of_species_references (#2094)

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• Cleanup time symbols (#2096)

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Commits on May 22, 2023

• Update Doxygen (#2099)

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• update swig ignores (#2098)

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• PEtab-multilanguage proof of concept for PySB-PEtab (#1800)

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• CMake: Fix choosing SWIG via env variable (#2100)

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Commits on May 23, 2023

• Fix unquoted filename (#2105)

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• CMake: Try FindBLAS if no other information was provided (#2104)

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Commits on May 25, 2023

• CI: Increase number of starts in ExampleSplinesSwameye2003.ipynb (#2113)

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• Pin nbsphinx (#2114)

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• Fix cblas error for models without solver states in combination with forward sensitivities (#2108)

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• Fix compilation error for models with events and xdot=0 (#2111)

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Commits on May 26, 2023

• Fix import error for models with events and 0 states (#2112)

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• Cleanup .github/workflows/test_windows.yml

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• Warn if ASA is used in combination with events (#2097)

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• GHA: Skip spline tests under valgrind (#2116)

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• Bump version number; update release notes

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