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Update documentation stack / tox.ini for building documentation #2213

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merged 4 commits into from
Dec 1, 2023

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@dweindl dweindl commented Nov 29, 2023

  • Update exhale, sphinx, ... to fix some incompatibilities
  • Set up tox.ini for building documentation

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codecov bot commented Nov 29, 2023

Codecov Report

Merging #2213 (ab78ad6) into develop (664994c) will decrease coverage by 22.74%.
Report is 1 commits behind head on develop.
The diff coverage is 78.45%.

❗ Current head ab78ad6 differs from pull request most recent head f418276. Consider uploading reports for the commit f418276 to get more accurate results

Additional details and impacted files

Impacted file tree graph

@@             Coverage Diff              @@
##           develop    #2213       +/-   ##
============================================
- Coverage    76.51%   53.77%   -22.74%     
============================================
  Files           86       43       -43     
  Lines        15025     5668     -9357     
============================================
- Hits         11496     3048     -8448     
+ Misses        3529     2620      -909     
Flag Coverage Δ
cpp ?
cpp_python ?
petab 53.77% <78.45%> (+0.02%) ⬆️
python ?
sbmlsuite ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Coverage Δ
python/sdist/amici/__main__.py 0.00% <ø> (ø)
python/sdist/amici/petab/cli/import_petab.py 0.00% <ø> (ø)
python/sdist/amici/petab/simulator.py 100.00% <100.00%> (ø)
python/sdist/amici/petab_util.py 0.00% <ø> (ø)
python/tests/test_petab_import.py 100.00% <100.00%> (ø)
python/tests/test_petab_objective.py 100.00% <ø> (ø)
python/tests/test_petab_simulate.py 100.00% <ø> (ø)
python/sdist/amici/parameter_mapping.py 0.00% <0.00%> (ø)
python/sdist/amici/petab_objective.py 0.00% <0.00%> (-92.71%) ⬇️
python/sdist/amici/petab_simulate.py 0.00% <0.00%> (-100.00%) ⬇️
... and 5 more

... and 65 files with indirect coverage changes

@dweindl dweindl self-assigned this Nov 29, 2023
* Update exhale, sphinx, ... to fix some incompatibilities
* Set up tox.ini for building documentation
@dweindl dweindl marked this pull request as ready for review December 1, 2023 09:54
@dweindl dweindl requested a review from a team as a code owner December 1, 2023 09:54
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👍

@dweindl dweindl merged commit b0eedd9 into AMICI-dev:develop Dec 1, 2023
6 of 7 checks passed
@dweindl dweindl deleted the tox_doc branch December 1, 2023 10:42
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2 participants