Code

Support for PEtab SciML in jax#2614

Code

Draft

FFroehlich wants to merge 42 commits intodevelopAMICI-dev/AMICI:developfrom jax_scimlAMICI-dev/AMICI:jax_scimlCopy head branch name to clipboard

+1,890-140

Commits

Commits on Nov 28, 2024

• add jax serialisation

  FFroehlich

  committed
  512c56c

  Copy full SHA for 512c56c

• doc

  FFroehlich

  committed
  9fd5835

  Copy full SHA for 9fd5835

• no compilation for jax

  FFroehlich

  committed
  862586d

  Copy full SHA for 862586d

• bad ruff

  FFroehlich

  committed
  674c481

  Copy full SHA for 674c481

• Update ExampleJaxPEtab.ipynb

  FFroehlich

  committed
  3e7d453

  Copy full SHA for 3e7d453

• bad ruff

  FFroehlich

  committed
  b2a95b1

  Copy full SHA for b2a95b1

• Update ExampleJaxPEtab.ipynb

  FFroehlich

  committed
  8b713e6

  Copy full SHA for 8b713e6

Commits on Nov 30, 2024

• add nan safe log&divide

  FFroehlich

  committed
  f79a96e

  Copy full SHA for f79a96e

Commits on Dec 1, 2024

• merge

  FFroehlich

  committed
  aec0712

  Copy full SHA for aec0712

Commits on Dec 2, 2024

• some net cases and first ude testcase passing

  FFroehlich

  committed
  2672be2

  Copy full SHA for 2672be2

• some more passing ude test

  FFroehlich

  committed
  76d599c

  Copy full SHA for 76d599c

• updates

  FFroehlich

  committed
  0605b78

  Copy full SHA for 0605b78

• Merge branch 'develop' into jax_sciml

  FFroehlich

  committed
  d166f03

  Copy full SHA for d166f03

• fix merge

  FFroehlich

  committed
  ca209ac

  Copy full SHA for ca209ac

• remove changes doc

  FFroehlich

  committed
  b201f4e

  Copy full SHA for b201f4e

• update net_004_alt test

  FFroehlich

  committed
  ea1c75e

  Copy full SHA for ea1c75e

Commits on Dec 3, 2024

• refactor to pytests

  FFroehlich

  committed
  b9add9d

  Copy full SHA for b9add9d

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  484e853

  Copy full SHA for 484e853

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  eea558b

  Copy full SHA for eea558b

• fixup merge

  FFroehlich

  committed
  b8632f1

  Copy full SHA for b8632f1

• fix net test-cases

  FFroehlich

  committed
  031b524

  Copy full SHA for 031b524

• fixes & remove sciml dependency

  FFroehlich

  committed
  cfb0b5a

  Copy full SHA for cfb0b5a

Commits on Dec 6, 2024

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  2b698fb

  Copy full SHA for 2b698fb

Commits on Dec 8, 2024

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  d14d2af

  Copy full SHA for d14d2af

• fixup, add initial condition support

  FFroehlich

  committed
  8b8f9a8

  Copy full SHA for 8b8f9a8

• Update petab.py

  FFroehlich

  committed
  982d275

  Copy full SHA for 982d275

• Update test_petab_sciml.yml

  FFroehlich

  committed
  33f86bb

  Copy full SHA for 33f86bb

• Update petab.py

  FFroehlich

  committed
  5a84682

  Copy full SHA for 5a84682

• Update petab.py

  FFroehlich

  committed
  97c7bbb

  Copy full SHA for 97c7bbb

• Update petab.py

  FFroehlich

  committed
  ac79583

  Copy full SHA for ac79583

• Update ExampleJaxPEtab.ipynb

  FFroehlich

  committed
  4de63c4

  Copy full SHA for 4de63c4

• ignore test warning

  FFroehlich

  committed
  2fb392c

  Copy full SHA for 2fb392c

• Update test_petab_sciml.yml

  FFroehlich

  committed
  4f3aff3

  Copy full SHA for 4f3aff3

• add hybridisation support

  FFroehlich

  committed
  9c3fd4d

  Copy full SHA for 9c3fd4d

• fix workflow

  FFroehlich

  committed
  1349ddb

  Copy full SHA for 1349ddb

Commits on Dec 13, 2024

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  731b925

  Copy full SHA for 731b925

Commits on Dec 19, 2024

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  2ec62a5

  Copy full SHA for 2ec62a5

• update testsuite

  FFroehlich

  committed
  4596dc4

  Copy full SHA for 4596dc4

• update after test refactor

  FFroehlich

  committed
  bd103db

  Copy full SHA for bd103db

Commits on Jan 27, 2025

• Merge branch 'develop' into jax_sciml

  FFroehlich

  authored
  6f9309c

  Copy full SHA for 6f9309c

• fix hybridization

  FFroehlich

  committed
  2b6308d

  Copy full SHA for 2b6308d

• Merge remote-tracking branch 'origin/jax_sciml' into jax_sciml

  FFroehlich

  committed
  6089a95

  Copy full SHA for 6089a95