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Separate pre-equilibration and dynamic simulation in jax #2617

Merged
merged 15 commits into from
Dec 5, 2024

Merge branch 'develop' into jax_separate_preeq_dyn

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Merged

Separate pre-equilibration and dynamic simulation in jax #2617

Merge branch 'develop' into jax_separate_preeq_dyn
d972f3e
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Codecov / codecov/project failed Dec 5, 2024 in 1s

77.88% (-0.01%) compared to d1c8250

View this Pull Request on Codecov

77.88% (-0.01%) compared to d1c8250

Details

Codecov Report

Attention: Patch coverage is 53.84615% with 12 lines in your changes missing coverage. Please review.

Project coverage is 77.88%. Comparing base (d1c8250) to head (d972f3e).

Files with missing lines Patch % Lines
python/sdist/amici/jax/model.py 41.66% 7 Missing ⚠️
python/sdist/amici/jax/petab.py 20.00% 4 Missing ⚠️
python/sdist/amici/petab/sbml_import.py 66.66% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #2617      +/-   ##
===========================================
- Coverage    77.89%   77.88%   -0.01%     
===========================================
  Files          330      330              
  Lines        21834    21845      +11     
  Branches      1477     1477              
===========================================
+ Hits         17007    17014       +7     
- Misses        4816     4820       +4     
  Partials        11       11              
Files with missing lines Coverage Δ
python/sdist/amici/jax/ode_export.py 97.95% <100.00%> (-0.05%) ⬇️
python/sdist/amici/petab/import_helpers.py 86.95% <100.00%> (+1.01%) ⬆️
python/sdist/amici/petab/petab_import.py 66.66% <ø> (ø)
python/sdist/amici/petab/sbml_import.py 73.55% <66.66%> (+0.22%) ⬆️
python/sdist/amici/jax/petab.py 71.76% <20.00%> (-1.41%) ⬇️
python/sdist/amici/jax/model.py 75.00% <41.66%> (-1.35%) ⬇️