Code

Realtime reduced data#82

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Merged

srichers merged 44 commits intodevelopmentAMReX-Astro/Emu:developmentfrom realtime_reduced_dataAMReX-Astro/Emu:realtime_reduced_dataCopy head branch name to clipboardApr 2, 2023

+707-108

Commits

Commits on Feb 2, 2023

• output time and step number to a file rather than screen. Will continue with more meaningful outputs

  

  Sherwood Richers

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  18b8dbd

Commits on Feb 3, 2023

• move all data reduction including file IO to a separate data reduction class

  

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  3b372b1

• added missing files for the DataReducer class

  

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  ad2a207

• bring amrex up to 23.02

  

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  38b408b

• added parallel reduction operation over grid. ParReduce is a bit more straightforward than doing the array reduction followed by a parallel reduction

  

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  f855cb9

• modify reduction operator to deal with an ArithmeticArray, which is an array that includes basic arithmetic operations

  

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  40b5685

• use code generator to make data reduction work for any number of flavors

  

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  6cfd7ed

• add Tr(rho) to the scalar output. Also only output to the reduction file if the processor id is 0

  

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  c6af031

• generate particle reduction code to work with any number of particles

  

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  8cb94e5

Commits on Feb 16, 2023

• added HighFive submodule

  

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  fba2efc

Commits on Mar 1, 2023

• first bit of support for hdf5 realtime io

  

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  24f5537

• added hdf5 support for all reduced data

  

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  90fe5ec

• added support for outputting the net energy of the system. Required adding one more scalar variable to each particle. This is a good metric to track numerical errors - the number should remain cons…

  Show description for 07ee3dd
  

  Sherwood Richers

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  07ee3dd

Commits on Mar 2, 2023

• remove commented reduction examples

  

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  ea9d796

• total energy should account for the relative number of real neutrinos present in a particular neutrino particle.

  

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  74cf458

Commits on Mar 28, 2023

• only output particle info at first timestep if it is output at any time

  

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  72dd52e

• add fluxes to realtime data output

  

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  7819617

• comment out print lines so initial conditions functions can be used more cleanly in scripts

  

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  819a634

Commits on Apr 2, 2023

• Reduced max grid size on FFI test to force MPI parallelism

  

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  1e45e09

• Run fiducial simulation in test suite. Will use it to test data reduction scripts as well.

  

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  ce52078

• Get rid of mpi errors in stdout

  

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  864f05a

• Reduce the number of steps the fiducial test takes to reduce testing time

  

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  f0c5d5a

• install yt to be able to test data reduction scripts

  

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  d02b6db

• Add more data reduction scripts to fiducial test

  

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  2da4e43

• First attempt at including HFD5 tests in jenkins

  

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  f57f90f

• Remove extraneous plot files to avoid accumuation of 'old' files during testing

  

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  8f4b45a

• move amrex to submodules directory

  

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  ec0213f

• Clean up makefiles to make them a little bit more user friendly and transparent

  

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  cfcadaa

• fix glob search string so reduction script doesnt match to reduced data files

  

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  8dc682b

• fix python script filename

  

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  ba0ae7a

• further reduce number of steps for test speed

  

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  260ccb7

• fix some paths to get hdf5 working in tests (hopefully)

  

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  9cc1f4e

• Protect reduced data file initialization to only occur for IO processor. Mixed in with some formatting changes from VS Code.

  

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  9baf856

• cache submodules for faster testing

  

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  1110636

• ignore hdf5 files

  

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  4388d0c

• Create a three-flavor version of the initial condition script.

  

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  c34908d

• Add understandable error message that works even when the code is not compiled in debug mode to save future headache

  

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  de0f749

• Add babysitting plot scripts to plot reduced data output. Add to Jenkins to make sure they work and the reduced data look good.

  

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  af20c1b

• add gnuplot library

  

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  d701974

• Rename one of the makefiles to be a clear default

  

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  70c4a4a

• draft update of the readme

  

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  5fd7b3b

• line spacing

  

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  2ea3ae5

• A few more tweaks going through the readme and testing

  

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  5414929

• updated change log for next version

  

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  7b97ed6