Update AMReX and Microphysics to release 22.03

AMReX-Astro · Mar 2, 2022 · 7249a71 · 7249a71
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diff --git a/external/Microphysics b/external/Microphysics
diff --git a/external/amrex b/external/amrex
+18 −7		.github/workflows/find_changed_files.py
+4 −4		networks/general_null/write_network.py
+6 −2		neutrinos/sneut5.H
+1 −0		requirements.txt
+17 −12		sphinx_docs/source/basics.rst
+1 −0		sphinx_docs/source/conf.py
+0 −20		sphinx_docs/source/cxx.rst
+36 −52		sphinx_docs/source/data_structures.rst
+1 −2		sphinx_docs/source/eos.rst
+0 −164		sphinx_docs/source/gpu.rst
+6 −7		sphinx_docs/source/index.rst
+149 −273		sphinx_docs/source/integrators.rst
+132 −0		sphinx_docs/source/networks-overview.rst
+18 −108		sphinx_docs/source/networks.rst
+5 −11		sphinx_docs/source/rp_intro.rst
+6 −1		unit_test/burn_cell_sdc/burn_cell.H
+1 −0		unit_test/test_sdc/react_zones.H
+52 −0		unit_test/test_sdc_vode_rhs/_parameters
+59 −34		unit_test/test_sdc_vode_rhs/inputs_aprox19
+239 −41		unit_test/test_sdc_vode_rhs/vode_rhs_test.H
+32 −0		CHANGES
+1 −1		Docs/sphinx_documentation/source/Debugging.rst
+1 −1		Docs/sphinx_documentation/source/GPU.rst
+58 −10		Docs/sphinx_documentation/source/LinearSolvers.rst
+162 −8		Docs/sphinx_documentation/source/TimeIntegration_Chapter.rst
+5 −5		Src/Amr/AMReX_StateDescriptor.H
+1 −1		Src/AmrCore/AMReX_AmrParticles.H
+1 −13		Src/Base/AMReX_FBI.H
+7 −61		Src/Base/AMReX_FabArray.H
+29 −53		Src/Base/AMReX_FabArrayCommI.H
+3 −9		Src/Base/AMReX_GpuPrint.H
+0 −4		Src/Base/AMReX_GpuQualifiers.H
+47 −2		Src/Base/AMReX_IntegratorBase.H
+1 −1		Src/Base/AMReX_PODVector.H
+2 −42		Src/Base/AMReX_Scan.H
+1 −0		Src/Base/AMReX_TableData.H
+55 −3		Src/Base/AMReX_TimeIntegrator.H
+28 −11		Src/Extern/HDF5/AMReX_ParticleHDF5.H
+3 −3		Src/Extern/HDF5/AMReX_ParticlesHDF5.H
+3 −2		Src/Extern/HDF5/AMReX_WriteBinaryParticleDataHDF5.H
+578 −0		Src/Extern/SUNDIALS/AMReX_SundialsIntegrator.H
+1 −0		Src/Extern/SUNDIALS/CMakeLists.txt
+1 −0		Src/Extern/SUNDIALS/Make.package
+4 −2		Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian.cpp
+2 −1		Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian_misc.cpp
+4 −4		Src/Particle/AMReX_NeighborParticles.H
+8 −8		Src/Particle/AMReX_NeighborParticlesCPUImpl.H
+4 −2		Src/Particle/AMReX_NeighborParticlesGPUImpl.H
+6 −6		Src/Particle/AMReX_NeighborParticlesI.H
+47 −12		Src/Particle/AMReX_ParticleCommunication.H
+2 −1		Src/Particle/AMReX_ParticleContainerBase.cpp
+21 −30		Src/Particle/AMReX_ParticleContainerI.H
+30 −13		Src/Particle/AMReX_ParticleIO.H
+56 −12		Src/Particle/AMReX_ParticleTile.H
+47 −19		Src/Particle/AMReX_Particles.H
+34 −15		Src/Particle/AMReX_WriteBinaryParticleData.H
+5 −0		Tools/C_scripts/AMReX_buildInfo.H
+21 −12		Tools/C_scripts/makebuildinfo_C.py