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zingale committed Jan 5, 2024
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17 changes: 17 additions & 0 deletions _sources/nersc-workflow.rst.txt
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Expand Up @@ -63,6 +63,23 @@ and an estimate of the start time can be found via:
to cancel a job, you would use ``scancel``.


Filesystems
^^^^^^^^^^^

We can run on the common filesystem, CFS, to share files with everyone
in the project. For instance, for project ``m3018``, we would do:

.. prompt:: bash

cd $CFS/m3018

There is a 20 TB quota here, which can be checked via:

.. prompt:: bash

showquota m3018


Chaining
^^^^^^^^

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9 changes: 9 additions & 0 deletions nersc-workflow.html
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Expand Up @@ -56,6 +56,7 @@
<li class="toctree-l2"><a class="reference internal" href="nersc-compilers.html">Compiling at NERSC</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Managing Jobs at NERSC</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#perlmutter">Perlmutter</a><ul>
<li class="toctree-l4"><a class="reference internal" href="#filesystems">Filesystems</a></li>
<li class="toctree-l4"><a class="reference internal" href="#chaining">Chaining</a></li>
</ul>
</li>
Expand Down Expand Up @@ -324,6 +325,14 @@ <h2>Perlmutter<a class="headerlink" href="#perlmutter" title="Link to this headi
</pre></div></div><p>and an estimate of the start time can be found via:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">squeue<span class="w"> </span>--me<span class="w"> </span>--start</span>
</pre></div></div><p>to cancel a job, you would use <code class="docutils literal notranslate"><span class="pre">scancel</span></code>.</p>
<section id="filesystems">
<h3>Filesystems<a class="headerlink" href="#filesystems" title="Link to this heading"></a></h3>
<p>We can run on the common filesystem, CFS, to share files with everyone
in the project. For instance, for project <code class="docutils literal notranslate"><span class="pre">m3018</span></code>, we would do:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1"><span class="nb">cd</span><span class="w"> </span><span class="nv">$CFS</span>/m3018</span>
</pre></div></div><p>There is a 20 TB quota here, which can be checked via:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">showquota<span class="w"> </span>m3018</span>
</pre></div></div></section>
<section id="chaining">
<h3>Chaining<a class="headerlink" href="#chaining" title="Link to this heading"></a></h3>
<p>To chain jobs, such that one queues up after the previous job
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1 change: 1 addition & 0 deletions nersc.html
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Expand Up @@ -102,6 +102,7 @@ <h1>Working at NERSC<a class="headerlink" href="#working-at-nersc" title="Link t
</li>
<li class="toctree-l1"><a class="reference internal" href="nersc-workflow.html">Managing Jobs at NERSC</a><ul>
<li class="toctree-l2"><a class="reference internal" href="nersc-workflow.html#perlmutter">Perlmutter</a><ul>
<li class="toctree-l3"><a class="reference internal" href="nersc-workflow.html#filesystems">Filesystems</a></li>
<li class="toctree-l3"><a class="reference internal" href="nersc-workflow.html#chaining">Chaining</a></li>
</ul>
</li>
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