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Add some PeleC options to the GNUmakefiles #709

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Nov 3, 2023
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3 changes: 3 additions & 0 deletions Exec/Make.PeleC
Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,9 @@ Blocs += $(PP_SRC_HOME)
ifeq ($(PELE_COMPILE_AJACOBIAN), TRUE)
DEFINES += -DPELE_COMPILE_AJACOBIAN
endif
ifeq ($(PELE_CVODE_FORCE_YCORDER), TRUE)
DEFINES += -DPELE_CVODE_FORCE_YCORDER
endif

# EOS
EOS_HOME = $(PELE_PHYSICS_HOME)/Eos/
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3 changes: 3 additions & 0 deletions Exec/Production/CavityFlame/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := LiDryer
Transport_Model := Simple
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5 changes: 4 additions & 1 deletion Exec/Production/ChallengeProblem/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -23,10 +23,13 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
USE_MASA = FALSE
Eos_Model := Fuego
Chemistry_Model := dodecane_lu_qss
Transport_Model := Simple
USE_MASA = FALSE

# Libraries
USE_HDF5 = FALSE
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3 changes: 3 additions & 0 deletions Exec/Production/JetFlame/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Transport_Model := Simple
Chemistry_Model := dodecane_lu
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3 changes: 3 additions & 0 deletions Exec/Production/PistonBowl/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := drm19
Transport_Model := Simple
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3 changes: 3 additions & 0 deletions Exec/RegTests/ChannelFlow/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := air
Transport_Model := Simple
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3 changes: 3 additions & 0 deletions Exec/RegTests/EB-BluffBody/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
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3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C1/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
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3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C10/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C11/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := Davis
Transport_Model := Simple
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3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C12/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C13/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C14/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C3/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := LiDryer
Transport_Model := Simple
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C4-5/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C7/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C8/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := Davis
Transport_Model := Simple
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-C9/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-ConvergingNozzle/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
# Eos_dir := Soave-Redlich-Kwong
Eos_Model := GammaLaw
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/EB-EnclosedVortex/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
# Eos_dir := Soave-Redlich-Kwong
Eos_Model := Fuego
Chemistry_Model := air
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3 changes: 3 additions & 0 deletions Exec/RegTests/EB-Plane/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/HIT/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/MMS/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/MassCons/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Chemistry_Model := Null
Transport_Model := Constant
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/MultiSpecSod/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := Davis
Transport_Model := Simple
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/PMF-SRK/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
USE_MASA = FALSE
Eos_Model := Soave-Redlich-Kwong
Chemistry_Model := LiDryer
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3 changes: 3 additions & 0 deletions Exec/RegTests/PMF/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
USE_MASA = FALSE
Eos_Model := Fuego
Chemistry_Model := LiDryer
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/Sedov/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/Shu-Osher/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/Sod/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/Soot-Flame/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := SootReaction
Transport_Model := Simple
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/Spray-Conv/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := decane_3sp
Transport_Model := Simple
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/TG/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := GammaLaw
Transport_Model := Constant
Chemistry_Model := Null
Expand Down
3 changes: 3 additions & 0 deletions Exec/RegTests/TGReact/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
USE_EXPLICIT_REACT = FALSE
ifeq ($(USE_EXPLICIT_REACT), TRUE)
Eos_Model := Fuego
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3 changes: 3 additions & 0 deletions Exec/RegTests/zeroD/GNUmakefile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,9 @@ FSANITIZER = FALSE
THREAD_SANITIZER = FALSE

# PeleC
PELE_CVODE_FORCE_YCORDER = FALSE
PELE_USE_MAGMA = FALSE
PELE_COMPILE_AJACOBIAN = FALSE
Eos_Model := Fuego
Chemistry_Model := LiDryer
Transport_Model := Simple
Expand Down
2 changes: 1 addition & 1 deletion Submodules/PelePhysics
Submodule PelePhysics updated 94 files
+12 −4 Docs/sphinx/Ceptr.rst
+12 −0 Reactions/ReactorCvode.H
+80 −33 Reactions/ReactorCvode.cpp
+14,745 −16,639 Support/Mechanism/Models/Aromatic_KrNara/mechanism.H
+4 −5 Support/Mechanism/Models/Aromatic_KrNara/mechanism.cpp
+1,044 −1,333 Support/Mechanism/Models/BurkeDryer/mechanism.H
+4 −5 Support/Mechanism/Models/BurkeDryer/mechanism.cpp
+4,115 −4,648 Support/Mechanism/Models/C1-C2-NO/mechanism.H
+4 −5 Support/Mechanism/Models/C1-C2-NO/mechanism.cpp
+18,922 −19,566 Support/Mechanism/Models/C1-C2-NO_qss/mechanism.H
+7 −8 Support/Mechanism/Models/C1-C2-NO_qss/mechanism.cpp
+1,622 −1,831 Support/Mechanism/Models/CH4_lean/mechanism.H
+4 −5 Support/Mechanism/Models/CH4_lean/mechanism.cpp
+3,973 −4,167 Support/Mechanism/Models/CH4_lean_qss/mechanism.H
+7 −8 Support/Mechanism/Models/CH4_lean_qss/mechanism.cpp
+1,256 −1,498 Support/Mechanism/Models/Davis/mechanism.H
+4 −5 Support/Mechanism/Models/Davis/mechanism.cpp
+2,017 −2,308 Support/Mechanism/Models/FFCM1_Red/mechanism.H
+4 −5 Support/Mechanism/Models/FFCM1_Red/mechanism.cpp
+460 −574 Support/Mechanism/Models/IonizedAir/mechanism.H
+714 −818 Support/Mechanism/Models/JL4/mechanism.H
+4 −5 Support/Mechanism/Models/JL4/mechanism.cpp
+1,088 −1,268 Support/Mechanism/Models/Kolla/mechanism.H
+4 −5 Support/Mechanism/Models/Kolla/mechanism.cpp
+850 −1,037 Support/Mechanism/Models/LiDryer/mechanism.H
+4 −5 Support/Mechanism/Models/LiDryer/mechanism.cpp
+4,167 −4,622 Support/Mechanism/Models/LuDME/mechanism.H
+4 −5 Support/Mechanism/Models/LuDME/mechanism.cpp
+3,164 −3,527 Support/Mechanism/Models/LuEthylene/mechanism.H
+4 −5 Support/Mechanism/Models/LuEthylene/mechanism.cpp
+25,860 −25,969 Support/Mechanism/Models/LuEthylene_qss/mechanism.H
+7 −8 Support/Mechanism/Models/LuEthylene_qss/mechanism.cpp
+15,223 −16,572 Support/Mechanism/Models/NUIGalway/mechanism.H
+4 −5 Support/Mechanism/Models/NUIGalway/mechanism.cpp
+4,448 −5,006 Support/Mechanism/Models/SootReaction/mechanism.H
+4 −5 Support/Mechanism/Models/SootReaction/mechanism.cpp
+253 −323 Support/Mechanism/Models/air/mechanism.H
+7,330 −8,154 Support/Mechanism/Models/alzeta/mechanism.H
+4 −5 Support/Mechanism/Models/alzeta/mechanism.cpp
+621 −721 Support/Mechanism/Models/chem-CH4-2step/mechanism.H
+4 −5 Support/Mechanism/Models/chem-CH4-2step/mechanism.cpp
+901 −1,030 Support/Mechanism/Models/chem-H/mechanism.H
+4 −5 Support/Mechanism/Models/chem-H/mechanism.cpp
+406 −484 Support/Mechanism/Models/decane_3sp/mechanism.H
+5,254 −5,830 Support/Mechanism/Models/dodecane_lu/mechanism.H
+4 −5 Support/Mechanism/Models/dodecane_lu/mechanism.cpp
+122,269 −122,966 Support/Mechanism/Models/dodecane_lu_qss/mechanism.H
+7 −8 Support/Mechanism/Models/dodecane_lu_qss/mechanism.cpp
+5,303 −5,913 Support/Mechanism/Models/dodecane_wang/mechanism.H
+4 −5 Support/Mechanism/Models/dodecane_wang/mechanism.cpp
+486 −572 Support/Mechanism/Models/dodmethair_4sp/mechanism.H
+1,946 −2,214 Support/Mechanism/Models/drm19/mechanism.H
+4 −5 Support/Mechanism/Models/drm19/mechanism.cpp
+2,839 −3,179 Support/Mechanism/Models/ethylene_af/mechanism.H
+4 −5 Support/Mechanism/Models/ethylene_af/mechanism.cpp
+3,094 −3,476 Support/Mechanism/Models/grimech12/mechanism.H
+4 −5 Support/Mechanism/Models/grimech12/mechanism.cpp
+3,409 −3,807 Support/Mechanism/Models/grimech30-noArN/mechanism.H
+4 −5 Support/Mechanism/Models/grimech30-noArN/mechanism.cpp
+5,060 −5,690 Support/Mechanism/Models/grimech30/mechanism.H
+4 −5 Support/Mechanism/Models/grimech30/mechanism.cpp
+406 −484 Support/Mechanism/Models/heptane_3sp/mechanism.H
+5,290 −5,878 Support/Mechanism/Models/heptane_fc/mechanism.H
+4 −5 Support/Mechanism/Models/heptane_fc/mechanism.cpp
+10,451 −11,434 Support/Mechanism/Models/heptane_lu_88sk/mechanism.H
+4 −5 Support/Mechanism/Models/heptane_lu_88sk/mechanism.cpp
+24,858 −25,602 Support/Mechanism/Models/heptane_lu_qss/mechanism.H
+7 −8 Support/Mechanism/Models/heptane_lu_qss/mechanism.cpp
+19,483 −20,996 Support/Mechanism/Models/isooctane_lu/mechanism.H
+4 −5 Support/Mechanism/Models/isooctane_lu/mechanism.cpp
+3,274 −3,602 Support/Mechanism/Models/methaneIons_diRenzo/mechanism.H
+4 −5 Support/Mechanism/Models/methaneIons_diRenzo/mechanism.cpp
+3,018 −3,402 Support/Mechanism/Models/ndodecane_35/mechanism.H
+253 −323 Support/Mechanism/Models/nitrogens/mechanism.H
+3,414 −3,822 Support/Mechanism/Models/propane_fc/mechanism.H
+4 −5 Support/Mechanism/Models/propane_fc/mechanism.cpp
+1,510 −1,731 Support/Mechanism/Models/sCO2/mechanism.H
+4 −5 Support/Mechanism/Models/sCO2/mechanism.cpp
+55 −26 Support/ceptr/ceptr/ceptr.py
+51 −297 Support/ceptr/ceptr/ck.py
+1 −2 Support/ceptr/ceptr/converter.py
+2 −4 Support/ceptr/ceptr/inputs.py
+61 −70 Support/ceptr/ceptr/jacobian.py
+76 −114 Support/ceptr/ceptr/production.py
+5 −6 Support/ceptr/ceptr/qssa.py
+33 −58 Support/ceptr/ceptr/qssa_converter.py
+9 −0 Support/ceptr/ceptr/species_info.py
+32 −68 Support/ceptr/ceptr/symbolic_math.py
+391 −484 Support/ceptr/ceptr/thermo.py
+8 −44 Support/ceptr/ceptr/transport.py
+60 −13 Support/ceptr/ceptr/utilities.py
+3 −0 Testing/Exec/Make.PelePhysics
+8 −4 ThirdParty/GNUmakefile
+11 −5 Utility/Diagnostics/DiagPDF.cpp
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