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Adding the radiation module #257

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Adding the radiation module

Adding the radiation module #257

Workflow file for this run

.github/workflows/ci.yml at bfbcf18
name: PeleLMeX-CI
on:
push:
branches: [development]
pull_request:
branches: [development]
concurrency:
group: ${{github.ref}}-${{github.head_ref}}-ci
cancel-in-progress: true
jobs:
Formatting:
runs-on: ubuntu-latest
steps:
- name: Clone
uses: actions/checkout@v3
- name: Check formatting
uses: DoozyX/[email protected]
with:
source: './Source ./Exec'
exclude: '.'
extensions: 'H,h,cpp'
clangFormatVersion: 16
CPU-GNUmake:
needs: Formatting
runs-on: ubuntu-latest
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Setup
working-directory: ./Exec/RegTests/FlameSheet
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=200M" >> $GITHUB_ENV
#printf "CC=gcc-10\nCXX=g++-10\nFC=gfortran-10\nF90=gfortran-10" \
# >> ${{github.workspace}}/Submodules/amrex/Tools/GNUMake/Make.local
make COMP=gnu USE_MPI=FALSE DEBUG=TRUE TPL
make COMP=llvm USE_MPI=FALSE DEBUG=TRUE PRECISION=FLOAT TPL
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ~/.cache/ccache
key: ccache-${{github.workflow}}-${{github.job}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-git-
- name: FlameSheet debug make
working-directory: ./Exec/RegTests/FlameSheet
run: |
echo "::add-matcher::.github/problem-matchers/gcc.json"
set -eu -o pipefail
ccache -z
make -j ${{env.NPROCS}} DIM=2 KEEP_BUILDINFO_CPP=TRUE USE_CCACHE=TRUE COMP=gnu USE_MPI=FALSE DEBUG=TRUE 2>&1 | tee -a build-output.txt
- name: FlameSheet ccache report
working-directory: ./Exec/RegTests/FlameSheet
run: |
ccache -s
du -hs ~/.cache/ccache
- name: FlameSheet debug test
working-directory: ./Exec/RegTests/FlameSheet
run: ./PeleLMeX2d.gnu.DEBUG.ex flamesheet-drm19-2d.inp amr.max_step=1 amr.plot_int=-1 amr.check_int=-1
- name: FlameSheet debug report
working-directory: ./Exec/RegTests/FlameSheet
run: |
egrep "warning:|error:" build-output.txt \
| egrep -v "Submodules/amrex|Submodules/sundials|Submodules/AMReX-Hydro|GNUmakefile" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
cat warnings.txt
export return=$(tail -n 1 warnings.txt | awk '{print $2}')
exit ${return}
#- name: EB debug build
# working-directory: ./Exec/RegTests/EB-C10
# run: |
# echo "::add-matcher::.github/problem-matchers/gcc.json"
# set -eu -o pipefail
# ccache -z
# make -j ${{env.NPROCS}} KEEP_BUILDINFO_CPP=TRUE USE_CCACHE=TRUE COMP=gnu USE_MPI=FALSE DEBUG=TRUE 2>&1 | tee -a build-output.txt
#- name: EB debug ccache report
# working-directory: ./Exec/RegTests/EB-C10
# run: |
# ccache -s
# du -hs ~/.cache/ccache
#- name: EB debug test
# working-directory: ./Exec/RegTests/EB-C10
# run: ./PeleLMeX3d.gnu.DEBUG.ex eb-c10.inp max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0
#- name: EB debug report
# working-directory: ./Exec/RegTests/EB-C10
# run: |
# egrep "warning:|error:" build-output.txt \
# | egrep -v "Submodules/amrex|Submodules/sundials|Submodules/AMReX-Hydro|GNUmakefile" \
# | egrep -v "ld: warning:" | sort | uniq \
# | awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
# cat warnings.txt
# export return=$(tail -n 1 warnings.txt | awk '{print $2}')
# exit ${return}
#- name: TG debug single precision build
# working-directory: ./Exec/RegTests/TG
# run: |
# echo "::add-matcher::.github/problem-matchers/gcc.json"
# set -eu -o pipefail
# ccache -z
# make -j ${{env.NPROCS}} KEEP_BUILDINFO_CPP=TRUE USE_CCACHE=TRUE COMP=llvm USE_MPI=FALSE DEBUG=TRUE PRECISION=FLOAT 2>&1 | tee -a build-output.txt
#- name: TG debug single precision ccache report
# working-directory: ./Exec/RegTests/TG
# run: |
# ccache -s
# du -hs ~/.cache/ccache
#- name: TG debug single precision test
# working-directory: ./Exec/RegTests/TG
# run: ./PeleLMeX3d.llvm.FLOAT.DEBUG.ex tg-2.inp max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0
#- name: TG debug single precision report
# working-directory: ./Exec/RegTests/TG
# run: |
# egrep "warning:|error:" build-output.txt \
# | egrep -v "Submodules/amrex|Submodules/sundials|Submodules/AMReX-Hydro|GNUmakefile" \
# | egrep -v "ld: warning:" | sort | uniq \
# | awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
# cat warnings.txt
# export return=$(tail -n 1 warnings.txt | awk '{print $2}')
# exit ${return}
#- name: Soot debug build
# working-directory: ./Exec/RegTests/Soot-Flame
# run: |
# echo "::add-matcher::.github/problem-matchers/gcc.json"
# set -eu -o pipefail
# ccache -z
# make -j ${{env.NPROCS}} KEEP_BUILDINFO_CPP=TRUE USE_CCACHE=TRUE COMP=gnu USE_MPI=FALSE DEBUG=TRUE 2>&1 | tee -a build-output.txt
#- name: Soot debug ccache report
# working-directory: ./Exec/RegTests/Soot-Flame
# run: |
# ccache -s
# du -hs ~/.cache/ccache
#- name: Soot debug report
# working-directory: ./Exec/RegTests/Soot-Flame
# run: |
# egrep "warning:|error:" build-output.txt \
# | egrep -v "Submodules/amrex|Submodules/sundials|GNUmakefile|Submodules/PeleMP|Submodules/AMReX-Hydro" \
# | egrep -v "Submodules/PelePhysics/Support/Mechanism/Models" | sort | uniq \
# | awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
# cat warnings.txt
# export return=$(tail -n 1 warnings.txt | awk '{print $2}')
# exit ${return}
#- name: Spray debug build
# working-directory: ./Exec/RegTests/Spray-Conv
# run: |
# echo "::add-matcher::.github/problem-matchers/gcc.json"
# set -eu -o pipefail
# ccache -z
# make -j ${{env.NPROCS}} KEEP_BUILDINFO_CPP=TRUE USE_CCACHE=TRUE COMP=gnu USE_MPI=FALSE DEBUG=TRUE 2>&1 | tee -a build-output.txt
#- name: Spray debug ccache report
# working-directory: ./Exec/RegTests/Soot-Flame
# run: |
# ccache -s
# du -hs ~/.cache/ccache
#- name: Spray debug report
# working-directory: ./Exec/RegTests/Spray-Conv
# run: |
# egrep "warning:|error:" build-output.txt \
# | egrep -v "Submodules/amrex|Submodules/sundials|GNUmakefile|Submodules/PeleMP|Submodules/AMReX-Hydro" \
# | egrep -v "Submodules/PelePhysics/Support/Mechanism/Models" | sort | uniq \
# | awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > warnings.txt
# cat warnings.txt
# export return=$(tail -n 1 warnings.txt | awk '{print $2}')
# exit ${return}
CPU-CMake:
needs: Formatting
runs-on: ${{matrix.os}}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
build_type: [Release, Debug]
include:
- os: macos-latest
install_deps: brew install mpich automake ccache
comp: llvm
procs: $(sysctl -n hw.ncpu)
ccache_cache: /Users/runner/Library/Caches/ccache
- os: ubuntu-latest
install_deps: sudo apt-get update && sudo apt-get install mpich libmpich-dev
comp: gnu
procs: $(nproc)
ccache_cache: ~/.cache/ccache
- build_type: Release
ctest_args: -LE no-ci
ccache_size: 100M
- build_type: Debug
ctest_args: -R eb-c12
ccache_size: 500M
exclude:
- os: macos-latest
build_type: Debug
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Python
uses: actions/setup-python@v4
with:
python-version: '3.8'
- name: Setup
run: |
echo "NPROCS=${{matrix.procs}}" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=${{matrix.ccache_size}}" >> $GITHUB_ENV
cmake -E make_directory ${{runner.workspace}}/deps
if [ "${RUNNER_OS}" != "macOS" ]; then
${{github.workspace}}/Submodules/amrex/.github/workflows/dependencies/ubuntu_free_disk_space.sh
fi
- name: Dependencies
run: |
# Install MPI
${{matrix.install_deps}}
# Install Python packages
python -m pip install --upgrade pip
pip install nose numpy pandas
- name: Install Ccache
run: |
if [ "${RUNNER_OS}" != "macOS" ]; then
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
fi
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ${{matrix.ccache_cache}}
key: ccache-${{github.workflow}}-${{github.job}}-${{matrix.os}}-${{matrix.build_type}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-${{matrix.os}}-${{matrix.build_type}}-git-
- name: Configure
run: |
(for DIM in 2 3; do \
printf "\n-------- Configuring ${DIM}D --------\n"; \
cmake -B${{runner.workspace}}/build-${DIM}d-${{matrix.os}}-${{matrix.build_type}} \
-DCMAKE_INSTALL_PREFIX:PATH=${{runner.workspace}}/install-${DIM}d-${{matrix.os}}-${{matrix.build_type}} \
-DCMAKE_BUILD_TYPE:STRING=${{matrix.build_type}} \
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DPELELMEX_DIM:STRING=${DIM} \
-DPELELMEX_ENABLE_MPI:BOOL=ON \
-DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
-DPELELMEX_ENABLE_MASA:BOOL=OFF \
-DMASA_ROOT:PATH=${{runner.workspace}}/deps/install/MASA \
-DCMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache \
${{github.workspace}}; \
if [ $? -ne 0 ]; then exit 1; fi \
done)
- name: Build
run: |
ccache -z
(for DIM in 2 3; do \
printf "\n-------- Building ${DIM}D --------\n"; \
cmake --build ${{runner.workspace}}/build-${DIM}d-${{matrix.os}}-${{matrix.build_type}} \
--parallel ${{env.NPROCS}} 2>&1 | tee -a ${{runner.workspace}}/build-output.txt; \
if [ ${PIPESTATUS[0]} -ne 0 ]; then exit 1; fi \
done)
- name: Ccache Report
run: |
ccache -s
du -hs ${{matrix.ccache_cache}}
- name: Report
run: |
echo "::add-matcher::.github/problem-matchers/gcc.json"
egrep "warning:|error:" ${{runner.workspace}}/build-output.txt \
| egrep -v "Submodules/amrex|Submodules/sundials|Submodules/AMReX-Hydro" \
| egrep -v "ld: warning:" | egrep -v "lto-wrapper: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > ${{runner.workspace}}/build-output-warnings.txt
cat ${{runner.workspace}}/build-output-warnings.txt
export return=$(tail -n 1 ${{runner.workspace}}/build-output-warnings.txt | awk '{print $2}')
exit ${return}
- name: Test
run: |
(for DIM in 2 3; do \
printf "\n-------- Testing ${DIM}D --------\n"; \
cd ${{runner.workspace}}/build-${DIM}d-${{matrix.os}}-${{matrix.build_type}}; \
ctest -j ${{env.NPROCS}} ${{matrix.ctest_args}} --output-on-failure; \
if [ $? -ne 0 ]; then exit 1; fi \
done)
GPU-Nvidia:
name: GPU-CUDA
needs: [Formatting, CPU-GNUmake]
runs-on: ubuntu-20.04
strategy:
matrix:
cuda_ver: [11.4]
include:
- cuda_ver: "11.4"
cuda_pkg: 11-4
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Setup
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=300M" >> $GITHUB_ENV
- name: Dependencies
run: |
${{github.workspace}}/Submodules/amrex/.github/workflows/dependencies/ubuntu_free_disk_space.sh
curl -O https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-keyring_1.0-1_all.deb
sudo dpkg -i cuda-keyring_1.0-1_all.deb
sudo apt-get update
sudo apt-get install -y \
cuda-command-line-tools-${{matrix.cuda_pkg}} \
cuda-compiler-${{matrix.cuda_pkg}} cuda-minimal-build-${{matrix.cuda_pkg}} \
cuda-nvml-dev-${{matrix.cuda_pkg}} cuda-nvtx-${{matrix.cuda_pkg}} \
libcurand-dev-${{matrix.cuda_pkg}} cuda-cupti-dev-${{matrix.cuda_pkg}} \
libcusolver-dev-${{matrix.cuda_pkg}} libcusparse-dev-${{matrix.cuda_pkg}} \
libcublas-dev-${{matrix.cuda_pkg}}
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ~/.cache/ccache
key: ccache-${{github.workflow}}-${{github.job}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-git-
- name: Configure
run: |
export PATH=/usr/local/nvidia/bin:/usr/local/cuda-${{matrix.cuda_ver}}/bin:${PATH}
export LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda-${{matrix.cuda_ver}}/lib:${LD_LIBRARY_PATH}
cmake -Bbuild-${{matrix.cuda_pkg}} \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DPELELMEX_ENABLE_MPI:BOOL=OFF \
-DPELELMEX_ENABLE_CUDA:BOOL=ON \
-DAMReX_CUDA_ERROR_CAPTURE_THIS:BOOL=ON \
-DCMAKE_CUDA_ARCHITECTURES:STRING=70 \
-DCMAKE_CUDA_COMPILER_LAUNCHER:STRING=ccache \
-DCMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache \
${{github.workspace}}
- name: Build
run: |
ccache -z
cmake --build build-${{matrix.cuda_pkg}} --parallel ${{env.NPROCS}}
- name: Ccache Report
run: |
ccache -s
du -hs ~/.cache/ccache
GPU-AMD:
name: GPU-HIP
needs: [Formatting, CPU-GNUmake]
runs-on: ubuntu-20.04
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Setup
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=80M" >> $GITHUB_ENV
- name: Dependencies
run: |
${{github.workspace}}/Submodules/amrex/.github/workflows/dependencies/ubuntu_free_disk_space.sh
curl -O https://repo.radeon.com/rocm/rocm.gpg.key
sudo apt-key add rocm.gpg.key
echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/5.6.1 ubuntu main' \
| sudo tee /etc/apt/sources.list.d/rocm.list
echo 'export PATH=/opt/rocm/llvm/bin:/opt/rocm/bin:/opt/rocm/profiler/bin:/opt/rocm/opencl/bin:$PATH' \
| sudo tee -a /etc/profile.d/rocm.sh
sudo apt-get update
sudo apt-get install -y rocm-dev rocrand-dev rocprim-dev
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ~/.cache/ccache
key: ccache-${{github.workflow}}-${{github.job}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-git-
- name: Configure
run: |
source /etc/profile.d/rocm.sh
which clang
which clang++
which hipcc
cmake -B${{runner.workspace}}/build-hip \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DCMAKE_CXX_COMPILER:STRING=$(which clang++) \
-DCMAKE_C_COMPILER:STRING=$(which clang) \
-DPELELMEX_ENABLE_MPI:BOOL=OFF \
-DPELELMEX_ENABLE_HIP:BOOL=ON \
-DAMReX_AMD_ARCH:STRING=gfx90a \
-DCMAKE_HIP_ARCHITECTURES:STRING=gfx90a \
-DAMDGPU_TARGETS:STRING=gfx90a \
-DGPU_TARGETS:STRING=gfx90a \
-DAMReX_GPU_RDC:BOOL=OFF \
-DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
-DCMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache \
${{github.workspace}}
- name: Build
run: |
echo "::add-matcher::.github/problem-matchers/gcc.json"
source /etc/profile.d/rocm.sh
ccache -z
cmake --build ${{runner.workspace}}/build-hip --parallel ${{env.NPROCS}}
- name: Ccache Report
run: |
ccache -s
du -hs ~/.cache/ccache
GPU-Intel:
name: GPU-SYCL
needs: [Formatting, CPU-GNUmake]
runs-on: ubuntu-latest
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Setup
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=80M" >> $GITHUB_ENV
echo "CCACHE_DEPEND=1" >> $GITHUB_ENV
- name: Dependencies
run: |
${{github.workspace}}/Submodules/amrex/.github/workflows/dependencies/ubuntu_free_disk_space.sh
sudo wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" \
| sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
sudo apt-get install -y intel-oneapi-compiler-dpcpp-cpp intel-oneapi-mkl-devel
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ~/.cache/ccache
key: ccache-${{github.workflow}}-${{github.job}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-git-
- name: Configure
run: |
set +e
source /opt/intel/oneapi/setvars.sh
set -e
cmake -B${{runner.workspace}}/build-sycl \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DCMAKE_CXX_COMPILER:STRING=$(which icpx) \
-DCMAKE_C_COMPILER:STRING=$(which icx) \
-DCMAKE_CXX_FLAGS:STRING=-fsycl \
-DPELELMEX_ENABLE_MPI:BOOL=OFF \
-DPELELMEX_ENABLE_MASA:BOOL=OFF \
-DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
-DPELELMEX_ENABLE_SYCL:BOOL=ON \
-DCMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache \
${{github.workspace}}
- name: Build
run: |
set +e
source /opt/intel/oneapi/setvars.sh
set -e
ccache -z
cmake --build ${{runner.workspace}}/build-sycl --parallel ${{env.NPROCS}}
- name: Ccache Report
run: |
ccache -s
du -hs ~/.cache/ccache
# Lint-cppcheck:
# needs: Formatting
# runs-on: macos-12
# steps:
# - name: Clone
# uses: actions/checkout@v3
# with:
# submodules: true
# - name: Dependencies
# run: |
# export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=TRUE
# wget https://raw.githubusercontent.com/Homebrew/homebrew-core/9b0e3d32f590458ae9e5dbf01943b39845b5315e/Formula/cppcheck.rb
# brew install cppcheck.rb
# - name: Configure
# run: |
# cmake -B${{runner.workspace}}/build-cppcheck \
# -DPELELMEX_ENABLE_MPI:BOOL=OFF \
# -DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
# -DPELELMEX_ENABLE_MASA:BOOL=OFF \
# -DPELELMEX_ENABLE_CPPCHECK:BOOL=ON \
# ${{github.workspace}}
# - name: Check
# working-directory: ${{runner.workspace}}/build-cppcheck
# run: make cppcheck
# - name: Full report
# working-directory: ${{runner.workspace}}/build-cppcheck/cppcheck
# run: cat cppcheck-full-report.txt
# - name: Short report
# working-directory: ${{runner.workspace}}/build-cppcheck/cppcheck
# run: |
# echo "::add-matcher::.github/problem-matchers/cppcheck.json"
# awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' < cppcheck-report.txt > cppcheck-warnings.txt
# cat cppcheck-warnings.txt
# export return=$(tail -n 1 cppcheck-warnings.txt | awk '{print $2}')
# exit ${return}
Lint-clang-tidy:
needs: Formatting
runs-on: ubuntu-latest
strategy:
matrix:
enableeb: [EB-OFF, EB-ON]
include:
- enableeb: EB-OFF
useeb: "OFF"
- enableeb: EB-ON
useeb: "ON"
fail-fast: false
steps:
- name: Setup
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
echo "CCACHE_COMPRESS=1" >> $GITHUB_ENV
echo "CCACHE_COMPRESSLEVEL=1" >> $GITHUB_ENV
echo "CCACHE_LOGFILE=${{github.workspace}}/ccache.log.txt" >> $GITHUB_ENV
echo "CCACHE_MAXSIZE=80M" >> $GITHUB_ENV
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Install Ccache
run: |
wget https://github.com/ccache/ccache/releases/download/v4.8/ccache-4.8-linux-x86_64.tar.xz
tar xvf ccache-4.8-linux-x86_64.tar.xz
sudo cp -f ccache-4.8-linux-x86_64/ccache /usr/local/bin/
- name: Set Up Ccache
uses: actions/cache@v3
with:
path: ~/.cache/ccache
key: ccache-${{github.workflow}}-${{github.job}}-${{matrix.useeb}}-git-${{github.sha}}
restore-keys: |
ccache-${{github.workflow}}-${{github.job}}-${{matrix.useeb}}-git-
- name: Configure
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
cmake -B${{runner.workspace}}/build-clang-tidy \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DCMAKE_CXX_COMPILER:STRING=clang++ \
-DCMAKE_C_COMPILER:STRING=clang \
-DPELELMEX_ENABLE_EB:BOOL=${{matrix.useeb}} \
-DPELELMEX_ENABLE_MPI:BOOL=OFF \
-DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
-DPELELMEX_ENABLE_MASA:BOOL=OFF \
-DPELELMEX_ENABLE_CLANG_TIDY:BOOL=ON \
-DCMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache \
${{github.workspace}}
- name: Check
working-directory: ${{runner.workspace}}/build-clang-tidy
run: |
#set -eu -o pipefail
cmake --build . --parallel ${{env.NPROCS}} 2>&1 | tee -a clang-tidy-full-report.txt
egrep "warning:|error:" clang-tidy-full-report.txt \
| egrep -v "Submodules/amrex|Submodules/sundials|Submodules/AMReX-Hydro" \
| egrep -v "ld: warning:" | sort | uniq \
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > clang-tidy-warnings.txt
- name: Ccache Report
run: |
ccache -s
du -hs ~/.cache/ccache
- name: Full report
working-directory: ${{runner.workspace}}/build-clang-tidy
run: cat clang-tidy-full-report.txt
- name: Short report
working-directory: ${{runner.workspace}}/build-clang-tidy
run: |
echo "::add-matcher::.github/problem-matchers/gcc.json"
cat clang-tidy-warnings.txt
export return=$(tail -n 1 clang-tidy-warnings.txt | awk '{print $2}')
exit ${return}
Lint-codeql:
needs: Formatting
runs-on: ubuntu-latest
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: true
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: cpp
queries: +security-and-quality
config-file: ./.github/codeql/codeql-config.yml
- name: Configure
run: |
echo "NPROCS=$(nproc)" >> $GITHUB_ENV
cmake -B${{runner.workspace}}/build-codeql \
-DCMAKE_BUILD_TYPE:STRING=Debug \
-DCMAKE_CXX_COMPILER:STRING=clang++ \
-DCMAKE_C_COMPILER:STRING=clang \
-DPELELMEX_ENABLE_MPI:BOOL=OFF \
-DPELELMEX_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
-DPELELMEX_ENABLE_MASA:BOOL=OFF \
-DPELELMEX_ENABLE_CLANG_TIDY:BOOL=OFF \
${{github.workspace}}
- name: Build
run: |
cmake --build ${{runner.workspace}}/build-codeql --parallel ${{env.NPROCS}}
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
with:
category: "/language:cpp"
upload: False
output: sarif-results
- name: Filter CodeQL sarif
uses: advanced-security/filter-sarif@v1
with:
patterns: |
-**/Submodules/sundials/**
-**/Submodules/amrex/**
-**/Submodules/AMReX-Hydro/**
input: sarif-results/cpp.sarif
output: sarif-results/cpp.sarif
- name: Upload CodeQL sarif
uses: github/codeql-action/upload-sarif@v2
with:
sarif_file: sarif-results/cpp.sarif
Lint-codespell:
needs: Formatting
runs-on: ubuntu-latest
steps:
- name: Clone
uses: actions/checkout@v3
with:
submodules: false
- name: Python
uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Dependencies
run: |
# Install Python packages
python -m pip install --upgrade pip
pip install codespell
- name: Run codespell
run: codespell
Save-PR-Number:
if: github.event_name == 'pull_request'
runs-on: ubuntu-latest
steps:
- name: Save PR number
env:
PR_NUMBER: ${{ github.event.number }}
run: |
echo $PR_NUMBER > pr_number.txt
- uses: actions/upload-artifact@v3
with:
name: pr_number
path: pr_number.txt
retention-days: 1