autoRIFT-ISCE3 workflow for Sentinel-1 processing

README.md

@@ -10,7 +10,7 @@ The HyP3-autoRIFT plugin provides a set of workflows for feature tracking proces
 1. Ensure that conda is installed on your system (we recommend using [mambaforge](https://github.com/conda-forge/miniforge#mambaforge) to reduce setup times).
 2. Clone the `hyp3-autorift` repository and navigate to the root directory of this project
    ```bash
-   git clone https://github.com/ASFHyP3/hyp3-autorift.git
+   git clone https://github.com/mfangaritav/hyp3-autorift.git
    cd hyp3-autorift
    ```
 3. Create  and activate your Python environment
@@ -19,9 +19,24 @@ The HyP3-autoRIFT plugin provides a set of workflows for feature tracking proces
    mamba env create -f environment.yml
    mamba activate hyp3-autorift
    ```
-4. Finally, install a development version of HyP3 autoRIFT
+4. Install a development version of HyP3 autoRIFT
    ```bash
    python -m pip install -e .
+   cd ..
+   ```
+5. Clone the `COMPASS` repository and navigate to the root directory of this project and install it.
+   ```bash
+   git clone https://github.com/mfangaritav/COMPASS.git
+   cd COMPASS
+   python -m pip install -e .
+   cd ..
+   ```
+6. Clone the `autoRIFT` repository and navigate to the root directory of this project and install it.
+   ```bash
+   git clone https://github.com/mfangaritav/autoRIFT.git
+   cd autoRIFT
+   python setup.py install
+   cd ..
    ```
 
 ## Usage
@@ -52,11 +67,11 @@ For example:
 
 ```
 hyp3_autorift \
-  "S2B_MSIL1C_20200612T150759_N0209_R025_T22WEB_20200612T184700" \
-  "S2A_MSIL1C_20200627T150921_N0209_R025_T22WEB_20200627T170912"
+  "S1_105606_IW1_20230612T025537_VV_3F09-BURST" \
+  "S1_105606_IW1_20230624T025538_VV_8279-BURST"
 ```
 
-This command will run autorift for a pair of Sentinel-2 images.
+This command will run autorift for a pair of Sentinel-1 bursts.
 
 > [!IMPORTANT]
 > Credentials are necessary to access Landsat and Sentinel-1 data. See the Credentials section for more information.

environment.yml

@@ -1,38 +1,58 @@
-name: hyp3-autorift
+name: hyp3-autorift-radar
 channels:
-  - hyp3
+#  - hyp3
   - conda-forge
   - nodefaults
 dependencies:
   - boto3
   - botocore
-  - python>=3.9,<3.10  # Top pin to fix ISCE2 incompatibility: https://github.com/isce-framework/isce2/issues/458
+  - python>=3.9
   - pip
   # For packaging, and testing
   - build
   - flake8
   - flake8-import-order
   - flake8-blind-except
   - flake8-builtins
-  - pillow
+  - pillow>=7.0
+  - pluggy
   - pytest
   - pytest-console-scripts
   - pytest-cov
+  - pytest-order
   - responses
   - setuptools>=61
   - setuptools_scm>=6.2
   # For running
+  - eigen
   - gdal>=3
   - h5netcdf
+  - h5py>=3.5
   - hyp3lib>=3,<4
-  - isce2=2.6.1.dev7
-  - autorift=1.5.0
+  - isce3>=0.14
   - opencv
   - boto3
   - matplotlib-base
   - netCDF4
-  - numpy<1.24 # https://github.com/isce-framework/isce2/pull/639
-  - pyproj
-  - requests
-  - scipy
+  - numpy>=1.20,<2.0
+  - pyproj>=3.3
+  - pysolid>=0.3
+  - ruamel.yaml>=0.15
+  - scipy>=1.0,<1.13
+  - yamale>=4.0
+  - requests>=2.0
+  - s1reader=0.2.2
+  - shapely>=2
+  - scikit-image
   - xarray
+  - packaging>=21.0
+  - lxml>=4.8
+  - tifffile>=2024.0.0
+  - asf_search
+  - dateparser!=1.1.0
+  - dem_stitcher
+  - burst2safe #get the develop version so it doesn't look for iw2
+  - pandas>=1.4
+  - progressbar
+  - rasterio
+  - gxx_linux-64>=9,<10

environment_isce2.yml

@@ -0,0 +1,38 @@
+name: hyp3-autorift
+channels:
+  - hyp3
+  - conda-forge
+  - nodefaults
+dependencies:
+  - boto3
+  - botocore
+  - python>=3.9,<3.10  # Top pin to fix ISCE2 incompatibility: https://github.com/isce-framework/isce2/issues/458
+  - pip
+  # For packaging, and testing
+  - build
+  - flake8
+  - flake8-import-order
+  - flake8-blind-except
+  - flake8-builtins
+  - pillow
+  - pytest
+  - pytest-console-scripts
+  - pytest-cov
+  - responses
+  - setuptools>=61
+  - setuptools_scm>=6.2
+  # For running
+  - gdal>=3
+  - h5netcdf
+  - hyp3lib>=3,<4
+  - isce2=2.6.1.dev7
+  - autorift=1.5.0
+  - opencv
+  - boto3
+  - matplotlib-base
+  - netCDF4
+  - numpy<1.24 # https://github.com/isce-framework/isce2/pull/639
+  - pyproj
+  - requests
+  - scipy
+  - xarray

src/hyp3_autorift/process.py

@@ -181,6 +181,8 @@ def least_precise_orbit_of(orbits):
 
 
 def get_datetime(scene_name):
+    if 'BURST' in scene_name:
+        return datetime.strptime(scene_name[14:29], '%Y%m%dT%H%M%S')
     if scene_name.startswith('S1'):
         return datetime.strptime(scene_name[17:32], '%Y%m%dT%H%M%S')
     if scene_name.startswith('S2') and len(scene_name) > 25:  # ESA
@@ -194,6 +196,8 @@ def get_datetime(scene_name):
 
 
 def get_platform(scene: str) -> str:
+    if 'BURST' in scene:
+        return 'GS1'
     if scene.startswith('S1') or scene.startswith('S2'):
         return scene[0:2]
     elif scene.startswith('L') and scene[3] in ('4', '5', '7', '8', '9'):
@@ -359,9 +363,11 @@ def process(
     platform = get_platform(reference)
 
     if platform == 'S1':
-        from hyp3_autorift.s1_isce2 import process_sentinel1_with_isce2
-        netcdf_file = process_sentinel1_with_isce2(reference, secondary, parameter_file)
-
+        from hyp3_autorift.s1_isce3 import process_sentinel1_with_isce3_slc
+        netcdf_file = process_sentinel1_with_isce3_slc(reference, secondary)
+    elif platform == 'GS1':
+        from hyp3_autorift.s1_isce3 import process_burst_sentinel1_with_isce3_radar
+        netcdf_file = process_burst_sentinel1_with_isce3_radar(reference, secondary)
     else:
         # Set config and env for new CXX threads in Geogrid/autoRIFT
         gdal.SetConfigOption('GDAL_DISABLE_READDIR_ON_OPEN', 'EMPTY_DIR')