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One use is to add sequences from these species (from the database) to the dada2 priors when --high_sensitivity is used (see #18)
Another use is have a pipeline output that explicitly notes if any of these species were detected in any of the samples, like a subsampled summary table. This would be important for biosecurity use of the pipeline
The text was updated successfully, but these errors were encountered:
jackscanlan
changed the title
User-supplied list of target species to pipeline -- multiple uses
Allow user-supplied list of target species to pipeline
Nov 14, 2024
jackscanlan
changed the title
Allow user-supplied list of target species to pipeline
Allow user-supplied list of target species
Nov 14, 2024
One use is to add sequences from these species (from the database) to the
dada2
priors when--high_sensitivity
is used (see #18)Another use is have a pipeline output that explicitly notes if any of these species were detected in any of the samples, like a subsampled summary table. This would be important for biosecurity use of the pipeline
The text was updated successfully, but these errors were encountered: