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Allow user-supplied list of target species #37

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jackscanlan opened this issue Nov 14, 2024 · 0 comments
Open

Allow user-supplied list of target species #37

jackscanlan opened this issue Nov 14, 2024 · 0 comments
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enhancement New feature or request

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@jackscanlan
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One use is to add sequences from these species (from the database) to the dada2 priors when --high_sensitivity is used (see #18)

Another use is have a pipeline output that explicitly notes if any of these species were detected in any of the samples, like a subsampled summary table. This would be important for biosecurity use of the pipeline

@jackscanlan jackscanlan added the enhancement New feature or request label Nov 14, 2024
@jackscanlan jackscanlan changed the title User-supplied list of target species to pipeline -- multiple uses Allow user-supplied list of target species to pipeline Nov 14, 2024
@jackscanlan jackscanlan changed the title Allow user-supplied list of target species to pipeline Allow user-supplied list of target species Nov 14, 2024
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