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20 Open 8 Closed
20 Open 8 Closed
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Issues list

Allow user-supplied list of target species enhancement New feature or request
#37 opened Nov 14, 2024 by jackscanlan
Remove high_sensitivity and threads from loci parameters fields cleaning Removal of unnecessary code or files
#36 opened Nov 13, 2024 by jackscanlan
Allow users to specify loci parameters solely through the command line enhancement New feature or request
#35 opened Nov 13, 2024 by jackscanlan
Check Singularity images can find files outside the launch directory validation Needs validation or testing
#34 opened Nov 13, 2024 by jackscanlan
1
Explicitly check permissions for files checked in PARSE_INPUTS validation Needs validation or testing
#33 opened Nov 13, 2024 by jackscanlan
Double-check FASTQC is running on the correct inputs (unsplit .fastq files) validation Needs validation or testing
#32 opened Nov 12, 2024 by jackscanlan
Replace projectDir with launchDir in each process' publishDir argument rework Redoing or refining something
#31 opened Nov 12, 2024 by jackscanlan
Adjustments to DADA2 parameters when using Nanopore data validation Needs validation or testing
#27 opened Aug 22, 2024 by jackscanlan Complete Nanopore integration
1
Handle when ASV is longer than reference database sequence (BLAST) bug Something isn't working
#26 opened Aug 22, 2024 by jackscanlan
@alexpiper
1
Handle extra process time needed for the first pull of a container low priority Things to do eventually
#25 opened Aug 20, 2024 by jackscanlan
1
Investigate tronko for taxonomic assignment via phylogenetic placement enhancement New feature or request low priority Things to do eventually
#21 opened Aug 16, 2024 by jackscanlan
Informative error when samplesheet contains incorrect primer sequences rework Redoing or refining something
#19 opened Aug 13, 2024 by jackscanlan
Chunk TAX_IDTAXA input to speed up taxonomic assignment rework Redoing or refining something
#16 opened Aug 1, 2024 by jackscanlan
Add a licence low priority Things to do eventually
#14 opened Jul 26, 2024 by alexpiper
1
Add OTU clustering functionality enhancement New feature or request
#13 opened Jul 26, 2024 by alexpiper
@jackscanlan
4
Rework output directory rework Redoing or refining something
#12 opened Jul 26, 2024 by jackscanlan
@jackscanlan
Read tracking might be broken at FILTER_SEQTAB and beyond bug Something isn't working
#11 opened Jul 24, 2024 by jackscanlan
Add template samplesheet.csv and loci_params.csv to respository enhancement New feature or request
#8 opened Jul 24, 2024 by jackscanlan
@jackscanlan
Make process resource requirements depend dynamically on input file properties enhancement New feature or request
#6 opened Jul 22, 2024 by jackscanlan
1
Handle case where no samples exceed min_sample_reads loci parameter bug Something isn't working
#3 opened Jul 16, 2024 by jackscanlan
2
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