Merge pull request #23 from AgPipeline/develop

Merging develop to main branch - no review

.github/workflows/docker_test_check.sh

@@ -37,7 +37,7 @@ BEGIN {
 }
 {
   if ($1 != "species") { # Skipping the header line
-    printf("(%s %s %s %s %s %s %s %s %s %s %s)\n", $8, $9, $10, $11, $12, $13, $14, $15, $16, $17, $18)
+    printf("(%s %s %s %s %s %s %s %s %s %s %s)\n", $9, $10, $11, $12, $13, $14, $15, $16, $17, $18, $19)
   }
 }
 END {

.github/workflows/testing_checks.yaml

@@ -43,12 +43,6 @@ jobs:
         run: python3 -m pip install --upgrade --no-cache-dir pip
       - name: Fetch/update setuptools
         run: python3 -m pip install --upgrade --no-cache-dir setuptools
-      - name: Install python-apt
-        run: sudo apt-get install -y python-apt
-      - name: HACK to fix apt-get update problem w/ different python versions
-        run: 'cd /usr/lib/python3/dist-packages && sudo cp apt_pkg.cpython-36m-x86_64-linux-gnu.so apt_pkg.so'
-      - name: Update apt-get
-        run: sudo apt-get update
       - name: Fetch/update testing pip installations
         run: python3 -m pip install --upgrade --no-cache-dir ${{ matrix.pip_installs }}
       - name: Fetch source code

README.md

@@ -1,3 +1,8 @@
+[![license](https://img.shields.io/badge/license-BSD%203-green?logo=Open-Source-Initiative)](https://github.com/AgPipeline/transformer-rgb-indices/blob/master/LICENSE)
+
+[![Enforcing testing](https://github.com/AgPipeline/transformer-rgb-indices/workflows/Enforcing%20tests/badge.svg)](https://github.com/AgPipeline/transformer-rgb-indices/actions?query=workflow%3A%22Enforcing+tests%22)
+[![testing](https://github.com/AgPipeline/transformer-rgb-indices/workflows/Testing%20Docker%20image/badge.svg)](https://github.com/AgPipeline/transformer-rgb-indices/actions?query=workflow%3A%22Testing+Docker+image%22)
+
 # Greenness Indices
 
 This algorithm computes a series of indices from RGB cameras. These can be used to assess crop and plant

test_data/rgb_plot.csv

@@ -1,2 +1,2 @@
 species,site,timestamp,lat,lon,citation_author,citation_year,citation_title,excess greenness index excess_greenness_index ([-510:510]), green leaf index  green_leaf_index ( [-1:1]), cive  cive ( [-255:255]), normalized difference index  normalized_difference_index(pxarray) ( [-127:129]), excess red  excess_red ( [-255:255]), exgr  exgr ( [-255:332]), combined indices 1  combined_indices_1 ( [-1000:1000]), combined indices 2  combined_indices_2 ( [-1000:1000]), vegetative index  vegetative_index ( [-255:255]), normalized green-red difference  ngrdi ( [-255:255]), percent green  percent_green ( [0:100])
-Sorghum bicolor,,2018-10-11,33.07454704500288,-111.97502671168861,"Clairessa Brown","2020","Woebbecke, D.M. et al",14.0,0.02,16.16,-1.53,56.53,-42.53,30.16,12.81,1.02,-0.02,0.34
+Sorghum bicolor,,2018-10-11,33.07454704500288,-111.97502671168861,"Clairessa Brown","2020","Woebbecke, D.M. et al",14,0.02,16.2,-1.53,56.5,-42.5,30.2,12.8,1.02,-0.02,0.34