Added command for wine msconvert (Docker)

AlanRace · Mar 4, 2019 · d1a7500 · d1a7500
1 parent eeeac55
commit d1a7500
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/jimzMLConverter/pom.xml b/jimzMLConverter/pom.xml
@@ -3,7 +3,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>com.alanmrace</groupId>
     <artifactId>jimzMLConverter</artifactId>
-    <version>2.0.3</version>
+    <version>2.0.4</version>
     <packaging>jar</packaging>
 
 

diff --git a/jimzMLConverter/src/main/java/com/alanmrace/jimzmlconverter/WatersRAWTomzMLConverter.java b/jimzMLConverter/src/main/java/com/alanmrace/jimzmlconverter/WatersRAWTomzMLConverter.java
@@ -26,6 +26,7 @@ public class WatersRAWTomzMLConverter {
     private static final Logger logger = Logger.getLogger(WatersRAWTomzMLConverter.class.getName());
 
     public static final String CONVERTER_NAME = "ProteoWizard";
+    public static final String WINE_CONVERTER = "wine msconvert";
     public static final String CONVERTER_FILENAME = "msconvert.exe";
     //public static final String CONVERTER_x64_LOCATION = "C:\\Program Files\\ProteoWizard";
     public static final String CONVERTER_LOCATION = "C:\\Program Files\\ProteoWizard";
@@ -143,12 +144,12 @@ private static VersionDetails parseVersionDetails(String path) {
 
     public static String getCommand() {
         try {
-            Process process = Runtime.getRuntime().exec(CONVERTER_FILENAME);
+            Process process = Runtime.getRuntime().exec(WINE_CONVERTER);
 
             // Wait for the conversion to complete
             process.waitFor();
 
-            return CONVERTER_FILENAME;
+            return WINE_CONVERTER;
         } catch (InterruptedException e) {
             e.printStackTrace();
         } catch (IOException e) {