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Added dependencies in the install instructions #3

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13 changes: 12 additions & 1 deletion README.md
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Expand Up @@ -11,7 +11,18 @@ Additional software needed:

To install all dependencies, try running `install_dependencies.sh`, which installs dependencies to `~/split_seq_reqs/`.

To install the package: run `pip install -e .` (might need sudo).
To install the package, run:

```
git clone https://github.com/Alex-Rosenberg/split-seq-pipeline.git
cd split-seq-pipeline
export HTSLIB_CONFIGURE_OPTIONS=--disable-bz2
pip install cython
pip install pandas
pip install scipy
pip install matplotlib
pip install -e . (might need sudo).
```

## Generating a reference genome
Download human reference genome<br>
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