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Updating lock files and requirements (#431)
Co-authored-by: benjijamorris <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,229 +1,238 @@ | ||
| # This file is @generated by PDM. | ||
| # Please do not edit it manually. | ||
|
|
||
| aicscytoparam==0.1.10 | ||
| aicsimageio==4.11.0 | ||
| aicscytoparam==0.1.12 | ||
| aicsimageio==4.14.0 | ||
| aicspylibczi==3.2.0 | ||
| aicsshparam==0.1.7 | ||
| aiobotocore==2.4.2 | ||
| aiohttp==3.9.3 | ||
| aioitertools==0.11.0 | ||
| aiohappyeyeballs==2.4.3 | ||
| aiohttp==3.10.8 | ||
| aioitertools==0.12.0 | ||
| aiosignal==1.3.1 | ||
| alembic==1.13.1 | ||
| alembic==1.13.3 | ||
| aniso8601==9.0.1 | ||
| anndata==0.9.2 | ||
| annotated-types==0.6.0 | ||
| anndata==0.10.9 | ||
| annotated-types==0.7.0 | ||
| antlr4-python3-runtime==4.9.3 | ||
| anyio==4.3.0 | ||
| arrow==1.3.0 | ||
| array-api-compat==1.8 | ||
| asciitree==0.3.3 | ||
| astropy==5.2.2 | ||
| async-timeout==4.0.3 | ||
| attrs==23.2.0 | ||
| autograd==1.6.2 | ||
| astropy==6.0.1 | ||
| astropy-iers-data==0.2024.9.30.0.32.59 | ||
| async-timeout==4.0.3; python_version < "3.11" | ||
| attrs==24.2.0 | ||
| autograd==1.7.0 | ||
| autopage==0.5.2 | ||
| backoff==2.2.1 | ||
| beautifulsoup4==4.12.3 | ||
| bfio==2.3.0 | ||
| blessed==1.20.0 | ||
| blinker==1.7.0 | ||
| bioio==1.1.0 | ||
| bioio-base==1.0.4 | ||
| bioio-czi==1.0.1 | ||
| bioio-ome-tiff==1.0.0 | ||
| bioio-tifffile==1.0.0 | ||
| blinker==1.8.2 | ||
| boto3==1.24.4 | ||
| botocore==1.27.59 | ||
| certifi==2024.2.2 | ||
| cachetools==5.5.0 | ||
| certifi==2024.8.30 | ||
| charset-normalizer==3.3.2 | ||
| click==8.1.7 | ||
| cliff==4.6.0 | ||
| cliff==4.7.0 | ||
| cloudpickle==3.0.0 | ||
| cmaes==0.10.0 | ||
| cmake==3.28.4 | ||
| cmaes==0.11.1 | ||
| cmake==3.30.4; platform_system == "Linux" and platform_machine == "x86_64" | ||
| cmd2==2.4.3 | ||
| colorama==0.4.6 | ||
| colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" | ||
| colorlog==6.8.2 | ||
| contourpy==1.1.1 | ||
| croniter==1.4.1 | ||
| contourpy==1.3.0 | ||
| cycler==0.12.1 | ||
| dask==2023.5.0 | ||
| dateutils==0.6.12 | ||
| deepdiff==6.7.1 | ||
| Deprecated==1.2.14 | ||
| distributed==2023.5.0 | ||
| docker==7.0.0 | ||
| dask==2024.8.0 | ||
| dask[array,distributed]==2024.8.0 | ||
| dask[array]==2024.8.0 | ||
| databricks-sdk==0.33.0 | ||
| deprecated==1.2.14 | ||
| distributed==2024.8.0 | ||
| docker==7.1.0 | ||
| e3nn==0.5.1 | ||
| edt==2.4.0 | ||
| einops==0.7.0 | ||
| elementpath==4.4.0 | ||
| entrypoints==0.4 | ||
| edt==2.4.1 | ||
| einops==0.8.0 | ||
| elementpath==4.5.0 | ||
| escnn==1.0.11 | ||
| exceptiongroup==1.2.0 | ||
| fastapi==0.110.0 | ||
| exceptiongroup==1.2.2; python_version < "3.11" | ||
| fasteners==0.19 | ||
| filelock==3.13.1 | ||
| fire==0.6.0 | ||
| Flask==3.0.2 | ||
| fonttools==4.50.0 | ||
| filelock==3.16.1 | ||
| fire==0.7.0 | ||
| flask==3.0.3 | ||
| fonttools==4.54.1 | ||
| frozenlist==1.4.1 | ||
| fsspec==2023.3.0 | ||
| future==1.0.0 | ||
| fsspec[http]==2023.3.0 | ||
| fsspec[s3]==2023.3.0 | ||
| geomloss==0.2.6 | ||
| gitdb==4.0.11 | ||
| gitpython==3.1.42 | ||
| gitpython==3.1.43 | ||
| google-auth==2.35.0 | ||
| gorilla==0.4.0 | ||
| graphene==3.3 | ||
| graphql-core==3.2.3 | ||
| graphql-core==3.2.4 | ||
| graphql-relay==3.2.0 | ||
| greenlet==3.0.3 | ||
| gunicorn==21.2.0 | ||
| h11==0.14.0 | ||
| h5py==3.10.0 | ||
| greenlet==3.1.1; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" | ||
| gunicorn==23.0.0; platform_system != "Windows" | ||
| h5py==3.12.1 | ||
| huggingface-hub==0.17.3 | ||
| humanize==4.9.0 | ||
| humanize==4.10.0 | ||
| hydra-colorlog==1.2.0 | ||
| hydra-core==1.3.2 | ||
| hydra-optuna-sweeper==1.2.0 | ||
| idna==3.6 | ||
| imagecodecs==2023.3.16 | ||
| imageio==2.34.0 | ||
| importlib-metadata==7.1.0 | ||
| inquirer==3.1.4 | ||
| itsdangerous==2.1.2 | ||
| Jinja2==3.1.3 | ||
| idna==3.10 | ||
| imagecodecs==2024.9.22 | ||
| imageio==2.27.0 | ||
| imageio-ffmpeg==0.5.1 | ||
| imageio[ffmpeg]==2.27.0 | ||
| importlib-metadata==8.4.0 | ||
| importlib-resources==6.4.5; python_version < "3.10" or sys_platform != "emscripten" | ||
| itkwasm==1.0b178 | ||
| itkwasm-downsample==1.4.2 | ||
| itkwasm-downsample-emscripten==1.4.2; sys_platform == "emscripten" | ||
| itkwasm-downsample-wasi==1.4.2; sys_platform != "emscripten" | ||
| itsdangerous==2.2.0 | ||
| jinja2==3.1.4 | ||
| jmespath==1.0.1 | ||
| joblib==1.3.2 | ||
| kiwisolver==1.4.5 | ||
| lazy-loader==0.3 | ||
| joblib==1.4.2 | ||
| kiwisolver==1.4.7 | ||
| lazy-loader==0.4 | ||
| lie-learn==0.0.1.post1 | ||
| lightning==2.0.9.post0 | ||
| lightning-cloud==0.5.65 | ||
| lightning-utilities==0.11.0 | ||
| lit==18.1.2 | ||
| lightning==2.3.3 | ||
| lightning-utilities==0.11.7 | ||
| lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" | ||
| locket==1.0.0 | ||
| lxml==4.9.4 | ||
| Mako==1.3.2 | ||
| markdown==3.6 | ||
| mako==1.3.5 | ||
| markdown==3.7 | ||
| markdown-it-py==3.0.0 | ||
| MarkupSafe==2.1.5 | ||
| matplotlib==3.7.5 | ||
| markupsafe==2.1.5 | ||
| matplotlib==3.9.2 | ||
| mdurl==0.1.2 | ||
| mlflow==2.11.3 | ||
| monai-weekly==1.4.dev2411 | ||
| mlflow==2.16.2 | ||
| mlflow-skinny==2.16.2 | ||
| monai-weekly==1.4.dev2439 | ||
| mpmath==1.3.0 | ||
| msgpack==1.0.8 | ||
| multidict==6.0.5 | ||
| msgpack==1.1.0 | ||
| multidict==6.1.0 | ||
| natsort==8.4.0 | ||
| networkx==3.1 | ||
| networkx==3.2.1 | ||
| ngff-zarr==0.8.7 | ||
| nibabel==5.2.1 | ||
| Ninja==1.11.1.1 | ||
| ninja==1.11.1.1 | ||
| numcodecs==0.12.1 | ||
| numpy==1.24.4 | ||
| nvidia-cublas-cu11==11.10.3.66 | ||
| nvidia-cuda-cupti-cu11==11.7.101 | ||
| nvidia-cuda-nvrtc-cu11==11.7.99 | ||
| nvidia-cuda-runtime-cu11==11.7.99 | ||
| nvidia-cudnn-cu11==8.5.0.96 | ||
| nvidia-cufft-cu11==10.9.0.58 | ||
| nvidia-curand-cu11==10.2.10.91 | ||
| nvidia-cusolver-cu11==11.4.0.1 | ||
| nvidia-cusparse-cu11==11.7.4.91 | ||
| nvidia-nccl-cu11==2.14.3 | ||
| nvidia-nvtx-cu11==11.7.91 | ||
| ome-types==0.5.1 | ||
| ome-zarr==0.8.3 | ||
| numpy==1.26.4 | ||
| nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" | ||
| nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" | ||
| ome-types==0.5.2 | ||
| ome-types[lxml]==0.5.2 | ||
| ome-zarr==0.9.0 | ||
| omegaconf==2.3.0 | ||
| opt-einsum==3.3.0 | ||
| online-stats==2023.6 | ||
| opentelemetry-api==1.27.0 | ||
| opentelemetry-sdk==1.27.0 | ||
| opentelemetry-semantic-conventions==0.48b0 | ||
| opt-einsum==3.4.0 | ||
| opt-einsum-fx==0.1.4 | ||
| optuna==2.10.1 | ||
| ordered-set==4.1.0 | ||
| ostat==0.2 | ||
| packaging==23.2 | ||
| pandas==1.5.3 | ||
| partd==1.4.1 | ||
| pbr==6.0.0 | ||
| pillow==10.2.0 | ||
| platformdirs==4.2.0 | ||
| point-cloud-utils==0.30.4 | ||
| pooch==1.8.1 | ||
| PrettyTable==3.10.0 | ||
| protobuf==3.20.1 | ||
| psutil==5.9.8 | ||
| packaging==24.1 | ||
| pandas==2.2.3 | ||
| partd==1.4.2 | ||
| pbr==6.1.0 | ||
| pillow==10.4.0 | ||
| platformdirs==4.3.6 | ||
| point-cloud-utils==0.31.0 | ||
| pooch==1.8.2 | ||
| positional-encodings==6.0.3 | ||
| prettytable==3.11.0 | ||
| protobuf==5.28.2 | ||
| psutil==6.0.0 | ||
| py3nj==0.1.2 | ||
| pyarrow==10.0.1 | ||
| pydantic==2.1.1 | ||
| pyarrow==17.0.0 | ||
| pyasn1==0.6.1 | ||
| pyasn1-modules==0.4.1 | ||
| pydantic==2.9.2 | ||
| pydantic-compat==0.1.2 | ||
| pydantic-core==2.4.0 | ||
| pyerfa==2.0.0.3 | ||
| pygments==2.17.2 | ||
| pyjwt==2.8.0 | ||
| pymanopt==2.2.0 | ||
| pydantic-core==2.23.4 | ||
| pyerfa==2.0.1.4 | ||
| pygments==2.18.0 | ||
| pymanopt==2.2.1 | ||
| pyntcloud==0.3.1 | ||
| pyparsing==3.1.2 | ||
| pyperclip==1.8.2 | ||
| pyparsing==3.1.4 | ||
| pyperclip==1.9.0 | ||
| pyreadline3==3.5.4; sys_platform == "win32" | ||
| pyrootutils==1.0.4 | ||
| pyshtools==4.10.3 | ||
| python-dateutil==2.9.0.post0 | ||
| python-dotenv==1.0.1 | ||
| python-editor==1.0.4 | ||
| python-multipart==0.0.9 | ||
| pytorch-lightning==2.2.1 | ||
| pytz==2024.1 | ||
| PyWavelets==1.4.1 | ||
| PyYAML==6.0.1 | ||
| querystring-parser==1.2.4 | ||
| readchar==4.0.6 | ||
| requests==2.31.0 | ||
| pytorch-lightning==2.3.3 | ||
| pytz==2024.2 | ||
| pywin32==306; sys_platform == "win32" | ||
| pyyaml==6.0.2 | ||
| requests==2.32.3 | ||
| resource-backed-dask-array==0.1.0 | ||
| rich==13.7.1 | ||
| rich==13.9.1 | ||
| rich-argparse==1.5.2 | ||
| rsa==4.9 | ||
| s3fs==2023.3.0 | ||
| s3transfer==0.6.2 | ||
| safetensors==0.4.2 | ||
| scikit-image==0.21.0 | ||
| scikit-learn==1.3.2 | ||
| scipy==1.9.3 | ||
| setuptools==69.2.0 | ||
| safetensors==0.4.5 | ||
| scikit-image==0.22.0 | ||
| scikit-learn==1.5.2 | ||
| scipy==1.13.1 | ||
| semver==3.0.2 | ||
| setuptools==75.1.0 | ||
| shellingham==1.5.4 | ||
| SimpleITK==2.3.1 | ||
| simpleitk==2.4.0 | ||
| six==1.16.0 | ||
| smmap==5.0.1 | ||
| sniffio==1.3.1 | ||
| sortedcontainers==2.4.0 | ||
| soupsieve==2.5 | ||
| sqlalchemy==2.0.28 | ||
| sqlparse==0.4.4 | ||
| starlette==0.36.3 | ||
| starsessions==1.3.0 | ||
| stevedore==5.2.0 | ||
| sympy==1.12 | ||
| sqlalchemy==2.0.35 | ||
| sqlparse==0.5.1 | ||
| stevedore==5.3.0 | ||
| sympy==1.13.3 | ||
| tblib==3.0.0 | ||
| termcolor==2.4.0 | ||
| threadpoolctl==3.4.0 | ||
| tifffile==2023.7.10 | ||
| timm==0.9.16 | ||
| threadpoolctl==3.5.0 | ||
| tifffile==2023.2.28 | ||
| timm==1.0.9 | ||
| toolz==0.12.1 | ||
| torch==2.0.1 | ||
| torch-geometric==2.5.2 | ||
| torchio==0.19.6 | ||
| torchmetrics==1.3.2 | ||
| torchserve==0.10.0 | ||
| torch-geometric==2.6.1 | ||
| torchio==0.20.0 | ||
| torchmetrics==1.4.2 | ||
| torchserve==0.12.0 | ||
| torchvision==0.15.2 | ||
| tornado==6.4 | ||
| tqdm==4.66.2 | ||
| traitlets==5.14.2 | ||
| triton==2.0.0 | ||
| typer==0.9.0 | ||
| types-python-dateutil==2.9.0.20240316 | ||
| typing-extensions==4.10.0 | ||
| universal-pathlib==0.2.2 | ||
| urllib3==1.26.18 | ||
| uvicorn==0.29.0 | ||
| vtk==9.3.0 | ||
| tornado==6.4.1 | ||
| tqdm==4.66.5 | ||
| triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" | ||
| typer==0.12.5 | ||
| typing-extensions==4.12.2 | ||
| tzdata==2024.2 | ||
| universal-pathlib==0.2.5 | ||
| urllib3==1.26.20 | ||
| vtk==9.3.1 | ||
| waitress==3.0.0; platform_system == "Windows" | ||
| wasmtime==25.0.0; sys_platform != "emscripten" | ||
| wcwidth==0.2.13 | ||
| websocket-client==1.7.0 | ||
| websockets==12.0 | ||
| Werkzeug==3.0.1 | ||
| wheel==0.43.0 | ||
| werkzeug==3.0.4 | ||
| wheel==0.44.0 | ||
| wrapt==1.16.0 | ||
| xarray==2023.1.0 | ||
| xmlschema==3.1.0 | ||
| xarray==2024.7.0 | ||
| xmlschema==3.4.2 | ||
| xsdata==24.3.1 | ||
| yarl==1.9.4 | ||
| zarr==2.16.1 | ||
| yarl==1.13.1 | ||
| zarr==2.15.0 | ||
| zict==3.0.0 | ||
| zipp==3.18.1 | ||
| zipp==3.20.2 |
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