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upgrade tifffile #436

Merged
merged 7 commits into from
Oct 11, 2024
Merged

upgrade tifffile #436

merged 7 commits into from
Oct 11, 2024

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benjijamorris
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What does this PR do?

Previous tests were failing because the tifffile version in the test-requirements was too old. Regular installation worked, but for the sake of passing tests, this enforces the tifffile version.

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  • Did you make sure your PR does only one thing, instead of bundling different changes together?
  • Did you list all the breaking changes introduced by this pull request?
  • Did you test your PR locally with pytest command?
  • Did you run pre-commit hooks with pre-commit run -a command?

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@pgarrison
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Great job figuring this out! Tentatively seems good, based on the logs of the Test job, but let's merge the result of this action into this feature branch before going ahead, to confirm the bug is fully resolved.

pgarrison and others added 6 commits October 8, 2024 20:42
…ate_2024-10-08_20-42

admin/requirements-update_2024-10-08_20-42
* update precommit

* style changes with updated precommit

* bandit skips

* precommit

* fix file checking

* check if prior is str

---------

Co-authored-by: Benjamin Morris <[email protected]>
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@ritvikvasan ritvikvasan left a comment

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How does aicsimageio/bioio installation work now? Do we just use bioio?

@@ -2,23 +2,23 @@
# Please do not edit it manually.

aicscytoparam==0.1.12
aicsimageio==4.14.0
aicsimageio==4.11.0
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tifffile was upgraded but aicsimageio was downgraded? Also do we install both bioio and aicsimageio?

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cyto-dl just uses bioio, aicsimageio is a dependency of pyshtools

@benjijamorris benjijamorris merged commit 76eeab4 into main Oct 11, 2024
4 of 6 checks passed
@benjijamorris benjijamorris deleted the bugfix/upgrade_tifffile branch October 11, 2024 18:59
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3 participants