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19 Open 13 Closed
19 Open 13 Closed
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Issues list

Running extremely slow at merge_cl step
#86 opened Nov 5, 2024 by DiracZhu1998
Creating the rd.dat for cl_merge - "too dense for [CR]sparseMatrix; would have more than 2^31-1 nonzero entries"
#84 opened Jul 12, 2024 by JordanWean
ERROR: dependency ‘qlcMatrix’ is not available for package ‘scrattch.hicat’
#82 opened Apr 30, 2024 by aarzalluz
Display_cl function
#80 opened Mar 11, 2024 by KatMedMed
2
Dependencies need to be updated
#79 opened Dec 7, 2023 by Rushil-Chakra
1
Constellation plots full example
#78 opened Oct 4, 2023 by salwanbutrus
Choosing the DE score threshold
#76 opened Feb 17, 2023 by dana-mcc
tutorial uses old column names
#75 opened Jan 6, 2023 by tmchartrand
install requirements
#73 opened Dec 6, 2021 by tmchartrand
after iter_clust, cl>49
#66 opened Jun 21, 2021 by yeetingc
Constellation plots: calculating knn in reduced dimension space - pca or umap?
#58 opened Aug 16, 2020 by carmensandoval
6
iter_clust keeps failing
#50 opened Mar 5, 2020 by deevdevil88
Check ref.cl data.frame annotation in compare_annotate
#45 opened Jul 22, 2019 by tebakken
run_consensus_clust missing return.markers = TRUE setting
#36 opened May 1, 2019 by tebakken
Split findVG to computation and plots enhancement New feature or request
#19 opened Oct 25, 2018 by hypercompetent
Addition of functions for checking whether clusters are outliers or donor-specific
#8 opened Sep 24, 2018 by SarojaSomu
Docs: Workflow of functions documentation Something needs to be documented!
#7 opened Sep 24, 2018 by hypercompetent
@adrisede
Clustering should be able to run without writing files enhancement New feature or request
#5 opened Jul 5, 2018 by hypercompetent
Verbosity needs to be adjustable enhancement New feature or request
#4 opened Jul 5, 2018 by hypercompetent
ProTip! What’s not been updated in a month: updated:<2024-10-28.