tests: gen examples

AllenNeuralDynamics · Jan 22, 2025 · 036dcee · 036dcee
1 parent 1850ca6
commit 036dcee
Show file tree

Hide file tree

Showing 20 changed files with 21 additions and 0 deletions.
diff --git a/examples/aibs_smartspim_instrument.json b/examples/aibs_smartspim_instrument.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "instrument_id": "440_SmartSPIM2_20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",

diff --git a/examples/aibs_smartspim_procedures.json b/examples/aibs_smartspim_procedures.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
    "schema_version": "1.2.5",
+   "extensions": null,
    "subject_id": "651286",
    "subject_procedures": [
       {

diff --git a/examples/aind_smartspim_instrument.json b/examples/aind_smartspim_instrument.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "instrument_id": "440_SmartSPIM1_20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",

diff --git a/examples/bergamo_ophys_session.json b/examples/bergamo_ophys_session.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
    "schema_version": "1.1.4",
+   "extensions": null,
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"

diff --git a/examples/data_description.json b/examples/data_description.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/data_description.py",
    "schema_version": "1.0.4",
+   "extensions": null,
    "license": "CC-BY-4.0",
    "platform": {
       "name": "Electrophysiology platform",

diff --git a/examples/ephys_rig.json b/examples/ephys_rig.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "rig_id": "323_EPHYS1_20231003",
    "modification_date": "2023-10-03",
    "mouse_platform": {

diff --git a/examples/ephys_session.json b/examples/ephys_session.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
    "schema_version": "1.1.4",
+   "extensions": null,
    "protocol_id": [],
    "experimenter_full_name": [
       "Max Quibble",

diff --git a/examples/exaspim_acquisition.json b/examples/exaspim_acquisition.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/acquisition.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "protocol_id": [],
    "experimenter_full_name": [
       "###"

diff --git a/examples/exaspim_instrument.json b/examples/exaspim_instrument.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "instrument_id": "440_exaSPIM1-20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "exaSPIM",

diff --git a/examples/fip_behavior_rig.json b/examples/fip_behavior_rig.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "rig_id": "447_FIP-Behavior_20000101",
    "modification_date": "2000-01-01",
    "mouse_platform": {

diff --git a/examples/fip_ophys_rig.json b/examples/fip_ophys_rig.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
    "schema_version": "1.0.5",
+   "extensions": null,
    "rig_id": "428_FIP1_20231003",
    "modification_date": "2023-10-03",
    "mouse_platform": {

diff --git a/examples/mri_session.json b/examples/mri_session.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
    "schema_version": "1.1.4",
+   "extensions": null,
    "protocol_id": [
       "dx.doi.org/10.57824/protocols.io.bh7kl4n6"
    ],

diff --git a/examples/multiplane_ophys_session.json b/examples/multiplane_ophys_session.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
    "schema_version": "1.1.4",
+   "extensions": null,
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"

diff --git a/examples/ophys_procedures.json b/examples/ophys_procedures.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
    "schema_version": "1.2.5",
+   "extensions": null,
    "subject_id": "625100",
    "subject_procedures": [
       {

diff --git a/examples/ophys_session.json b/examples/ophys_session.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
    "schema_version": "1.1.4",
+   "extensions": null,
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"

diff --git a/examples/procedures.json b/examples/procedures.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
    "schema_version": "1.2.5",
+   "extensions": null,
    "subject_id": "625100",
    "subject_procedures": [
       {

diff --git a/examples/processing.json b/examples/processing.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/processing.py",
    "schema_version": "1.1.5",
+   "extensions": null,
    "processing_pipeline": {
       "data_processes": [
          {

diff --git a/examples/quality_control.json b/examples/quality_control.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/quality_control.py",
    "schema_version": "1.2.2",
+   "extensions": null,
    "evaluations": [
       {
          "modality": {

diff --git a/examples/subject.json b/examples/subject.json
@@ -1,6 +1,7 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/subject.py",
    "schema_version": "1.0.3",
+   "extensions": null,
    "subject_id": "12345",
    "sex": "Male",
    "date_of_birth": "2022-11-22",

diff --git a/src/aind_data_schema/base.py b/src/aind_data_schema/base.py
@@ -142,6 +142,8 @@ class DataCoreModel(DataModel):
     schema_version: str = Field(
         ..., pattern=r"^\d+.\d+.\d+$", description="schema version", title="Version", frozen=True
     )
+
+    extensions: Optional[GenericModelType] = Field(default=None, title="Extensions")
 
     @field_validator("schema_version", mode="before")
     @classmethod