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v1.5.r0

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@jluebeck jluebeck released this 11 Dec 19:25
  • Caching of discordant read pairs during SV identification to reduce lookups on bam file. This gives a speedup of about 2x on average, but likely better returns on samples with incredibly large numbers of SVs.
  • Optimizations to fetching of downsampled reads (alters results slightly as randomness of downsampled reads is updated)
  • Optimization to intersection detection implemented in AA. Results in a small speedup.
  • Add support for parsing of SV VCF generated in GRIDSS having extra column for normal.
  • Logging improvements
  • Typo fixes (PR by cmdcolin)