Extending the analysis on sensitive species developed by Rindorf et al., (2020, Journal of Applied Ecology) Are fish sensitive to trawling recovering in the Northeast Atlantic? (https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2664.13693)
Analysis based on a population model (Gislason et al., 2008 https://doi.org/10.1093/icesjms/fsn035), a collection of traits, exploitation of demersal fish species (Walker et al., 2017 https://doi.org/10.1093/icesjms/fsw250), and abundances from European trawl surveys (https://datras.ices.dk/)
R Code scripts <load.clean.surveys.R> Downloading data from ICES Datras and cleaning (format and taxonomy) <model.R> Population model to quantify species sensitivity to fishing <abundance.sensitive.R> Developing species abundance indices across surveys for sensitive species <presence.sensitive.R> Developing species presence indices across surveys for sensitive species <autoloess.R> Additional function to automatically optimize loess fits
Results <Sensitive.csv> results from running <model.R> <Abundance.index.spp.pdf> results from running <abundance.sensitive.R> <Presence.index.spp.pdf> results from running <presence.sensitive.R>