Merge pull request #66 from AtlasOfLivingAustralia/64-automate-the-bu…

…ild-and-deployment-of-sensitive-species-dataxml

#64 automate the build and deployment of sensitive species dataxml

createxml.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Script to generate the sensitivie-species.xml file.
+# Script to generate the sensitive-species.xml file.
 #
 # Requires a config file to be present in /data/sds/sds-config.properties
 # Code must be built with `mvn clean install` 
@@ -10,19 +10,16 @@
 debug=0
 cd target
 
-# These two lines are used to find the most recent version jar files (by filename sort) in target dir (with and without assembly)
-jar_file=$(find . -maxdepth 1 -type f -regex '\./sds.*\.jar' | sort | grep -v 'assembly' | head -n 1) 
-assembly_file=$(find . -maxdepth 1 -type f -regex '\./sds.*\.jar' | sort | grep 'assembly' | head -n 1)
+# This line is used to find the most recent version shaded jar file in the target dir
+shaded_jar_file=$(find . -maxdepth 1 -type f -regex '\./sds.*\-shaded.jar' | sort | grep -v 'assembly' | head -n 1)
 
-if [ -z "$assembly_file" ] && [ -z "$jar_file" ]; then
+if [ -z "$shaded_jar_file" ]; then
   echo "No file matching the pattern was found."
 elif [ $debug -eq 1 ]; then
-  echo "File found: $jar_file"
-  echo "File found: $assembly_file"
+  echo "File found: ${shaded_jar_file}"
 else
-  # Create the lib directory and run the SensitiveSpeciesXmlBuilder "main" class
-  jar xf $assembly_file lib lib 
-  java -Xmx2g -Xms2g -classpath "${jar_file}:lib/*" au.org.ala.sds.util.SensitiveSpeciesXmlBuilder # > sensitive-species-data.xml
+  # Run the SensitiveSpeciesXmlBuilder "main" class
+  java -Xmx2g -Xms2g -classpath ${shaded_jar_file} au.org.ala.sds.util.SensitiveSpeciesXmlBuilder > sensitive-species-data.xml
 fi
 
 cd ..

pom.xml

@@ -193,6 +193,29 @@
                     </execution>
                 </executions>
             </plugin>
+            <!-- Plugin to create the JAR with dependencies -->
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-shade-plugin</artifactId>
+                <version>3.2.4</version>
+                <executions>
+                    <execution>
+                        <phase>package</phase>
+                        <goals>
+                            <goal>shade</goal>
+                        </goals>
+                        <configuration>
+                            <transformers>
+                                <transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
+                                    <mainClass>au.org.ala.sds.util.SensitiveSpeciesXmlBuilder</mainClass>
+                                </transformer>
+                            </transformers>
+                            <shadedArtifactAttached>true</shadedArtifactAttached>
+                            <shadedClassifierName>shaded</shadedClassifierName>
+                        </configuration>
+                    </execution>
+                </executions>
+            </plugin>
         </plugins>
     </build>
 </project>