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Precomputed db#17

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ArnaudBelcour merged 29 commits intomainAuReMe/esmecata:mainfrom precomputed_dbAuReMe/esmecata:precomputed_dbCopy head branch name to clipboardJan 27, 2025

+787-9,342

Commits

Commits on Nov 11, 2024

• Add option threshold to precomputed.

  ArnaudBelcour

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  a9f68f0

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• Remove obs_name without annotation from the incorporation into the precomputed database.

  Show description for 0670052
  ArnaudBelcour

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  0670052

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Commits on Nov 13, 2024

• When using threshold, remove taxa with 0 protein clusters and annots.

  ArnaudBelcour

  committed
  232a6a6

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Commits on Nov 20, 2024

• Update method to find prediction issues with database.

  ArnaudBelcour

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  644cfbc

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• Fix error in file extension.

  ArnaudBelcour

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  5444fe6

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• Fix wrong folder use in previous commits.

  ArnaudBelcour

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  23245f2

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• Fix issue in path for issue with tax IDs in database.

  ArnaudBelcour

  committed
  e5e1d0d

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Commits on Nov 21, 2024

• Get database version from precomputed database file.

  ArnaudBelcour

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  ab6d58f

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• Update precomputed test database.

  ArnaudBelcour

  committed
  79902b9

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• Update changelog.

  ArnaudBelcour

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  1ccc9b4

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• Merge remote-tracking branch 'origin/main' into precomputed_db

  ArnaudBelcour

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  40252ab

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• Update readme with new option for esmecata precomputed.

  ArnaudBelcour

  committed
  7b555b9

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Commits on Dec 12, 2024

• Fix issue in get_taxon_obs_name function.

  ArnaudBelcour

  committed
  4c82cfd

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Commits on Dec 13, 2024

• Add --gseapyCutOff option to gseapy_enrichr.

  ArnaudBelcour

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Commits on Jan 6, 2025

• Update to 0.6.0.

  ArnaudBelcour

  committed
  3ecf17c

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• Merge branch 'main' into precomputed_db

  ArnaudBelcour

  committed
  12d862b

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Commits on Jan 8, 2025

• Merge branch 'main' into precomputed_db

  ArnaudBelcour

  committed
  54f7b62

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• Add precomputed database Zenodo.

  ArnaudBelcour

  committed
  86d7e79

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Commits on Jan 10, 2025

• Fix issue in proteome_tax_id_file when using precomputed.

  ArnaudBelcour

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  3979627

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Commits on Jan 13, 2025

• Update figure workflow.

  ArnaudBelcour

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  01858e0

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• Add missing background in figure.

  ArnaudBelcour

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  846fced

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Commits on Jan 24, 2025

• Fix several typos.

  ArnaudBelcour

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  70d15e7

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• Fix header name in output file.

  ArnaudBelcour

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  29896af

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• Fix issues with test.

  ArnaudBelcour

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  cc46266

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• Update changelog.

  ArnaudBelcour

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  f68e665

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Commits on Jan 27, 2025

• Update readme.

  ArnaudBelcour

  committed
  78681df

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• Update changelog.

  ArnaudBelcour

  committed
  122fac5

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• Fix several typos.

  ArnaudBelcour

  committed
  3cceacd

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• Fix issues in test.

  ArnaudBelcour

  committed
  45222c8

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