converted medimage/dicom-set to medimage/dicom-series

Australian-Imaging-Service · Dec 20, 2023 · 8855a18 · 8855a18
1 parent 09861a9
commit 8855a18
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Showing 3 changed files with 16 additions and 16 deletions.
diff --git a/australian-imaging-service/mri/human/neuro/bidsapps/fmriprep.yaml b/australian-imaging-service/mri/human/neuro/bidsapps/fmriprep.yaml
@@ -75,76 +75,76 @@ command:
       configuration:
         path: anat/T1w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     T2w:
       datatype: medimage/nifti-gz-x
       help: "T2-weighted anatomical scan"
       configuration:
         path: anat/T2w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     bold:
       datatype: medimage/nifti-gz-x
       help: "functional MRI"
       configuration:
         path: func/task-rest_bold
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_magnitude1:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 1 & 2: magnitude of first echo"
       configuration:
         path: fmap/magnitude1
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_magnitude2:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 1 & 2: magnitude of second echo"
       configuration:
         path: fmap/magnitude2
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_magnitude:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 3: magnitude image used for anatomical reference"
       configuration:
         path: fmap/magnitude
       column_defaults:
-        datatype: medimage/dicom-set 
+        datatype: medimage/dicom-series 
     fmap_phasediff:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 1: phasediff image corresponding to the phase-diff map between echo times"
       configuration:
         path: fmap/phasediff
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_phase1:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 2: phase of first echo"
       configuration:
         path: fmap/phase1
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_phase2:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 2: phase of second echo"
       configuration:
         path: fmap/phase2
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_fieldmap:
       datatype: medimage/nifti-gz-x
       help: "Field map - BIDS Case 3: directly reconstructed field map"
       configuration:
         path: fmap/fieldmap
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fmap_epi:
       datatype: medimage/nifti-gz-x
       configuration:
         path: fmap/epi
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
       help: >-
         Field map - BIDS Case 4: Spin Echo EPI scans with different phase encoding
         directions to estimate the distortion map corresponding to the nonuniformities

diff --git a/australian-imaging-service/mri/human/neuro/bidsapps/mriqc.yaml b/australian-imaging-service/mri/human/neuro/bidsapps/mriqc.yaml
@@ -34,21 +34,21 @@ command:
       configuration:
         path: anat/T1w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     T2w:
       datatype: medimage/nifti-gz-x
       help: "T2-weighted anatomical scan"
       configuration:
         path: anat/T2w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     fMRI:
       datatype: medimage/nifti-gz-x
       help: "functional MRI"
       configuration:
         path: func/task-rest_bold
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
   outputs:
     mriqc:
       datatype: generic/directory

diff --git a/australian-imaging-service/mri/human/neuro/bidsapps/smriprep.yaml b/australian-imaging-service/mri/human/neuro/bidsapps/smriprep.yaml
@@ -38,14 +38,14 @@ command:
       configuration:
         path: anat/T1w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
     T2w:
       datatype: medimage/nifti-gz-x
       help: "T2-weighted anatomical scan"
       configuration:
         path: anat/T2w
       column_defaults:
-        datatype: medimage/dicom-set
+        datatype: medimage/dicom-series
   outputs:
     smriprep:
       datatype: generic/directory