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fixed recursive globbing and added manifest handling to upload #62

fixed recursive globbing and added manifest handling to upload

fixed recursive globbing and added manifest handling to upload #62

Workflow file for this run

name: tests
on:
push:
branches:
- main
- develop
pull_request:
defaults:
run:
shell: bash
jobs:
build:
strategy:
matrix:
os: [ubuntu-latest]
python-version: ["3.10", "3.11"]
fail-fast: false
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Disable etelemetry
run: echo "NO_ET=TRUE" >> $GITHUB_ENV
- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install other dependencies
run: |
sudo apt-get update
sudo apt-get install -y libxml2-dev libxslt-dev git dcmtk
- name: Update build tools
run: python -m pip install --upgrade pip
- name: Install Xnat-Ingest
run: python -m pip install .[test]
- name: Save XNAT username/password in ~/.netrc
run: |
echo "machine localhost:8080" > $HOME/.netrc
echo "user admin" >> $HOME/.netrc
echo "password admin" >> $HOME/.netrc
- name: Pytest
run: pytest -vvs --cov xnat_ingest --cov-config .coveragerc --cov-report xml .
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
fail_ci_if_error: true
token: ${{ secrets.CODECOV_TOKEN }}