Upload Non-DICOM primary files and resources independently

[tclose]

• Non-DICOM files can be used as the primary files from which to read the project/subject/session ID information from. Just need to be implemented in FileFormats
• Stage and uploads are now check against existing files at the resource level (instead of session) for incremental uploads of session data
• Adds Discord logging

[codecov]

Codecov Report

Attention: Patch coverage is 71.35279% with 216 lines in your changes missing coverage. Please review.

Project coverage is 78.65%. Comparing base (7827a91) to head (4869b92).
Report is 16 commits behind head on main.

Files with missing lines	Patch %	Lines
xnat_ingest/upload_helpers.py	49.11%	86 Missing ⚠️
xnat_ingest/cli/upload.py	65.17%	39 Missing ⚠️
xnat_ingest/resource.py	71.71%	28 Missing ⚠️
xnat_ingest/cli/stage.py	65.51%	20 Missing ⚠️
xnat_ingest/session.py	84.76%	16 Missing ⚠️
xnat_ingest/utils.py	71.69%	15 Missing ⚠️
xnat_ingest/store.py	76.59%	11 Missing ⚠️
xnat_ingest/scan.py	98.11%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #21      +/-   ##
==========================================
+ Coverage   78.05%   78.65%   +0.60%     
==========================================
  Files          13       16       +3     
  Lines        1171     1279     +108     
==========================================
+ Hits          914     1006      +92     
- Misses        257      273      +16     

Flag	Coverage Δ
	78.65% <71.35%> (+0.60%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.