Merge branch 'workflow-main' into feat/reintegrate-workflow

# Conflicts:
#	.github/pull_request_template.md
#	.github/workflows/publish-package-pypi.yml
#	.github/workflows/test-pytest.yml
#	.gitignore
#	.pre-commit-config.yaml
#	README.md
#	docs/index.md
#	docs/pipeline/Experimentalist Pipeline Examples.ipynb
#	mkdocs.yml
#	pyproject.toml
#	src/autora/experimentalist/pipeline.py
#	src/autora/experimentalist/utils.py
#	src/autora/utils/dictionary.py
#	src/autora/variable/__init__.py
#	src/autora/variable/time.py
#	tests/test_experimentalist_pipeline.py

.github/workflows/docs-publish.yml

@@ -0,0 +1,23 @@
+name: Publish Documentation to GitHub Pages
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: write
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: 3.x
+          cache: 'pip'
+
+      - name: Install dependencies
+        run: pip install ".[dev]"
+
+      - run: mkdocs gh-deploy --force

.github/workflows/python-publish.yml

@@ -0,0 +1,39 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python
+      uses: actions/setup-python@v3
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build package
+      run: python -m build
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/test-pytest.yml

@@ -1,6 +1,3 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
-
 name: Test with py.test
 
 on:

.gitignore

@@ -1,6 +1,3 @@
-# AutoRA-specific files
-example/studies/**/modeling
-
 # PyCharm ignores are handled by the .idea/.gitignore file
 # VSCode ignores are handled by the .vscode/.gitignore file
 

.pre-commit-config.yaml

@@ -22,7 +22,7 @@ repos:
     rev: "v1.5.1"
     hooks:
       - id: mypy
-        additional_dependencies: [types-requests,scipy,pytest]
+        additional_dependencies: [types-requests,scipy,pytest,types-PyYAML]
         language_version: python3.8
         args:
           - "--namespace-packages"