Update to v0.4.0 #125
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Test suite | |
on: | |
workflow_dispatch: | |
pull_request: | |
branches: ['develop', 'master'] | |
paths: | |
- '.github/workflows/testsuite.yml' | |
- 'superdsm/**' | |
- 'examples/**' | |
- 'superdsm.yml' | |
- 'tests/**' | |
- 'requirements.txt' | |
jobs: | |
run_testsuite: | |
name: Test suite | |
runs-on: gpuagrohr-01 | |
container: | |
image: ubuntu:22.04 | |
defaults: | |
run: | |
shell: bash -el {0} | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Clear cache # otherwise corrupted packages can be reported sometimes | |
run: rm -rf /github/home/conda_pkgs_dir | |
- name: Install dependencies | |
run: apt-get update && apt-get install -y git | |
- name: Setup Miniconda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniconda-version: 'latest' | |
channels: conda-forge, bioconda, defaults | |
auto-update-conda: true | |
auto-activate-base: false | |
activate-environment: superdsm | |
environment-file: superdsm.yml | |
- name: Export the environment | |
run: 'conda env export | grep -v "^prefix: " > superdsm.yml' | |
- name: Save the environment as an artifact | |
uses: actions/upload-artifact@v4 | |
with: | |
name: superdsm.yml | |
path: superdsm.yml | |
- name: Run SuperDSM | |
run: python -m "unittest" |