index.html

---
layout: default
title: Alkan lab
categories:
 - home
---

<div class="row">
	<div class="col-lg-12">
		<object class="pull-left biglogo" data="/images/logo.svg" type="image/svg+xml"></object>
		<div class="title logobox">
			Bioinformatics & Computational Genomics 
		</div>
	</div>
</div>

<div class="bigspacer"></div>

<div class="bigspacer"></div>

<div class="row">
	<div class="col-lg-12">
			<div class="smallhead">

		<center>
			<img src="images/alkanlab_2024.JPG" style="width: 90%;"><br>
			<p><small>Alkan Lab - October 2024. <br>
			(left to right) Arda, Zülal, Akmuhammet, Ecem, Mete, Sıla, Rafi, Şeyma, Klea (on tablet), Can, Rana, Ali, Ömer, Berkan, Ricardo, Begüm and Ebrar.
			</small></p>
			</center>

      <p>
      At the Bioinformatics and Computational Genomics Group, we develop combinatorial algorithms to analyze genomic sequence data to discover, genotype, and phase genomic variants with a special focus on structural variation. We are also interested in algorithms for <i>de novo</i> genome assembly, pangenomics, and hardware/software co-design to accelerate computational workloads.
      </p>
		</div>
	</div>
</div>

<div class="bigspacer"></div>
<div class="bigspacer"></div>

<!--
<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			<a class="off" href="/papers/">Recent papers</a>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	{% for paper in site.categories.papers limit:4 %}
	<div class="col-lg-3 reduced-gutter">
		<div class="pad-left">
			<div class="note">
				<i class="fa fa-file-text-o fa-fw"></i>
				<a class="off" href="{{ paper.url }}">
				{{ paper.title }}
				</a>
			</div>
			<div class="smallspacer"></div>
			<div class="smallnote">
				Posted
				{{ paper.date | date: "%-d %b %Y" }}
			</div>
			<div class="bigspacer"></div>
		</div>
	</div>
	{% endfor %}
</div>

-->



<!--
<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			<a class="off" href="/projects/">Active projects</a>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	{% for project in site.data.projects limit:4 %}
	<div class="col-lg-3 reduced-gutter">
		<div class="pad-left">
			<div class="note">
				<i class="fa fa-edit fa-fw"></i>
				<a class="off" href="{{ project.url }}">
				{{ project.title }} - {{ project.description }}
				</a>
			</div>
			<div class="smallspacer"></div>
			<div class="smallnote">
				Updated
				<a class="off" href="{{ project.commits.first.url }}">
				{{ project.commits.first.date | date: "%-d %b %Y" }}
				</a>
				by
				<a class="off" href="{{ project.commits.first.author_url }}">
				{{ project.commits.first.author_login }}
				</a>
			</div>
			<div class="bigspacer"></div>
		</div>
	</div>
	{% endfor %}
</div>

-->

<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			Misc
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	<div class="col-lg-12 reduced-gutter">
		<div class="pad-left">
			<ul class="list-inline">
				{% for page in site.categories.misc %}
				<li class="footernav list-inline-item">
					<i class="fa fa-angle-right"></i> <a class="off" href="{{ page.url }}">{{ page.title }}</a>
				</li>
				{% endfor %}
			</ul>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
  <div class="col-lg-12">
    <div class="float-lg-right" style="vertical-align: bottom; display: table-cell;">
<!--
      <a class="off" href="https://www.bjk.com.tr/">
        <img src="/images/logos/logo_bjk_grayscale.jpg">
      </a>
-->
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://www.bilkent.edu.tr/">
        <img src="/images/logos/logo_bilkent_grayscale.png">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://www.cs.bilkent.edu.tr/">
        <img src="/images/logos/logo_bilkent_cs_grayscale.png">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://bilimakademisi.org/">
        <img src="/images/logos/logo_bilimakademisi_grayscale.png">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://www.embo.org/">
        <img src="/images/logos/logo_embo_grayscale.jpg">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://research-and-innovation.ec.europa.eu/funding/funding-opportunities/funding-programmes-and-open-calls/horizon-europe_en">
        <img src="/images/logos/logo_horizoneurope_grayscale.jpg">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
    </div>
  </div>
</div>