Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

requesting bedtools,samtools,ucsc-bedgraphtobigwig #2726

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

tamuanand
Copy link
Contributor

bedtools=2.31.0,samtools=1.17,ucsc-bedgraphtobigwig=447

bedtools=2.31.0,samtools=1.17,ucsc-bedgraphtobigwig=447
@tamuanand
Copy link
Contributor Author

Hi @bgruening

The build fails with this message

[Aug 25 09:11:16] SOUT └─ ucsc-bedgraphtobigwig 447**  does not exist (perhaps a typo or a missing channel).
[Aug 25 09:11:16] ERRO Task processing failed: Unexpected exit code [1] of container [0b33c8b4d276 step-91e56cb114], container preserved

However, it does exist - https://anaconda.org/bioconda/ucsc-wigtobigwig/files

Any ideas?

Thanks.

@bgruening
Copy link
Member

You link goes to wigtobigwig but you want bedgraph?

@tamuanand
Copy link
Contributor Author

tamuanand commented Aug 25, 2023

Hi @bgruening

In PR 2727, I could get it to work with version 377.

Yes, for different purpose, I need wigToBigWig,-and I am working on it

Thanks.

@bgruening
Copy link
Member

Let me know how I can help.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants