Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix changing number of fields by SeqFilter #122

Open
wants to merge 4 commits into
base: develop
Choose a base branch
from

Conversation

greatfireball
Copy link
Member

Fixes #121

The number of fields in SeqFilter output might differ, the program now extracts the second and the last field. Therefore, it is guaranteed to work with a variable field number.

Fixes #121

The number of fields in SeqFilter output might differ, the program now extracts the second and the last field. Therefore, it is guaranteed to work with a variable field number.
@greatfireball greatfireball requested a review from thackl February 7, 2018 13:39
@greatfireball
Copy link
Member Author

When will we increase version numbers @thackl ?

@thackl
Copy link
Contributor

thackl commented Feb 7, 2018

Good question. When we feel like it I guess ;)

@greatfireball
Copy link
Member Author

:)

I would like to add a test-case for that issue... Therefore, it might be better to wait with the merge.

Sorry for already opening it

@thackl
Copy link
Contributor

thackl commented Feb 7, 2018

Sure. I'll wait

@greatfireball
Copy link
Member Author

I added test to ensure the normal behavior with multiple sequences as well as single sequences. Moreover, I changed the testing system from simply running make sample to run test using shunit2. Additionally I added all current samtools versions starting at 1.2 up to 1.7.

Will that cause a version number change @thackl ? Your decision :)

@greatfireball
Copy link
Member Author

Should we add that also to the master branch?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants