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Add secondary structure prediction. #42

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wants to merge 8 commits into from
Closed

Add secondary structure prediction. #42

wants to merge 8 commits into from

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shuuul
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@shuuul shuuul commented Sep 18, 2023

Solve the problem in #33

  • Add ss_code field to Residue.
  • Add run_dssp and run_stride.
  • Add support for ProteinStructure with multiple models.
  • Add ss_code! to assign ss_code to residue.
  • Add ss_code to read ss_code of residue/atom.
  • Add helixselector, sheetselector, coilselector

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codecov bot commented Sep 18, 2023

Codecov Report

Patch coverage: 96.88% and project coverage change: +0.18% 🎉

Comparison is base (bc70e73) 95.51% compared to head (188fe9c) 95.70%.

Additional details and impacted files
@@            Coverage Diff             @@
##           master      #42      +/-   ##
==========================================
+ Coverage   95.51%   95.70%   +0.18%     
==========================================
  Files           6        7       +1     
  Lines        1695     1769      +74     
==========================================
+ Hits         1619     1693      +74     
  Misses         76       76              
Files Changed Coverage Δ
src/BioStructures.jl 100.00% <ø> (ø)
src/pdb.jl 88.65% <85.71%> (ø)
src/mmtf.jl 99.33% <96.42%> (ø)
src/spatial.jl 95.11% <97.43%> (ø)
src/model.jl 96.30% <98.48%> (-0.01%) ⬇️
src/mmcif.jl 98.73% <100.00%> (ø)
src/secondary.jl 100.00% <100.00%> (ø)

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@jgreener64
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Thanks for doing this. Could you undo the general formatting changes so that I can see the line diffs better?

@shuuul shuuul closed this by deleting the head repository Sep 19, 2023
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2 participants