Disable bspm for base BiocManager installs

Bioconductor · May 7, 2024 · e35aca9 · e35aca9
1 parent e257be6
commit e35aca9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/builder.Dockerfile b/builder.Dockerfile
@@ -2,4 +2,4 @@ ARG BASE_IMAGE=ghcr.io/bioconductor/r2u
 ARG UBUNTU_TAG=jammy
 FROM ${BASE_IMAGE}:${UBUNTU_TAG} AS base
 ARG BIOC_VERSION=3.19
-RUN apt update -qq && apt install git-all build-essential binutils lintian debhelper dh-make devscripts curl vim dh-r -y && curl -O https://raw.githubusercontent.com/Bioconductor/bioconductor_docker/devel/bioc_scripts/install_bioc_sysdeps.sh && bash install_bioc_sysdeps.sh $BIOC_VERSION 
+RUN apt update -qq && apt install git-all build-essential binutils lintian debhelper dh-make devscripts curl vim dh-r -y && curl -O https://raw.githubusercontent.com/Bioconductor/bioconductor_docker/devel/bioc_scripts/install_bioc_sysdeps.sh && sed -i 's/install.packages("BiocManager"/bspm::disable(); install.packages("BiocManager"/g' install_bioc_sysdeps.sh && sed -i 's/BiocManager::install(version=/bspm::disable(); BiocManager::install(version=/g' install_bioc_sysdeps.sh && bash install_bioc_sysdeps.sh $BIOC_VERSION