Cache image #10
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| name: Cache image | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| containers: | |
| description: Container(s) to cache (comma-separated) | |
| required: true | |
| jobs: | |
| deploywrappers: | |
| name: Deploy DaemonSet | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Helm | |
| run: curl https://raw.githubusercontent.com/helm/helm/master/scripts/get-helm-3 | bash | |
| - name: save kubeconfig | |
| shell: bash | |
| run: mkdir -p ~/.kube && echo "${{ secrets.TEST_KUBECONFIG }}" > ~/.kube/config | |
| - name: Install Kubectl | |
| run: curl -LO "https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl" && chmod +x ./kubectl && sudo mv ./kubectl /usr/local/bin/kubectl && kubectl version | |
| - name: Deploy DaemonSet | |
| run: | | |
| cat << "EOF" > ds-template.yaml | |
| apiVersion: apps/v1 | |
| kind: DaemonSet | |
| metadata: | |
| name: PLACEHOLDERNAME-cache-daemonset | |
| namespace: cache-gxy | |
| spec: | |
| selector: | |
| matchLabels: | |
| name: PLACEHOLDERNAME-cache | |
| template: | |
| metadata: | |
| labels: | |
| name: PLACEHOLDERNAME-cache | |
| spec: | |
| affinity: | |
| nodeAffinity: | |
| requiredDuringSchedulingIgnoredDuringExecution: | |
| nodeSelectorTerms: | |
| - matchExpressions: | |
| - key: bioconductor.org/type | |
| operator: In | |
| values: ["worker"] | |
| containers: | |
| - name: PLACEHOLDERNAME-cache | |
| image: PLACEHOLDERCONTAINER | |
| resources: | |
| limits: | |
| cpu: 10m | |
| memory: 10Mi | |
| requests: | |
| cpu: 5m | |
| memory: 5Mi | |
| command: | |
| - /bin/sh | |
| args: | |
| - "-c" | |
| - "sleep 604800" | |
| terminationGracePeriodSeconds: 1 | |
| EOF | |
| cat << "EOF" > /tmp/create-ds.sh | |
| IFS=',' read -ra CONTAINERS <<< "$1" | |
| for CONTAINER in "${CONTAINERS[@]}"; do | |
| NAME=$(echo "$CONTAINER" | sed "s/[^[:alnum:]-]//g") | |
| cp ds-template.yaml "$NAME-ds-template.yaml" | |
| sed -i "s#PLACEHOLDERNAME#$NAME#g" $NAME-ds-template.yaml | |
| sed -i "s#PLACEHOLDERCONTAINER#$CONTAINER#g" $NAME-ds-template.yaml | |
| sed -i "s#PLACEHOLDERNODES#$(kubectl get nodes -o custom-columns='NAME:.metadata.name' --no-headers | grep 'cluster-' | awk '{printf "\"%s\",", $1}' | sed 's/,$//')#g" $NAME-ds-template.yaml | |
| kubectl apply -f $NAME-ds-template.yaml | |
| done | |
| EOF | |
| bash /tmp/create-ds.sh '${{inputs.containers}}' |