test-command #253
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| name: Test command workflow | |
| on: | |
| repository_dispatch: | |
| types: [test-command] | |
| jobs: | |
| test: | |
| name: Deploy values to test | |
| runs-on: ubuntu-latest | |
| env: | |
| ISSUE_NUM: ${{ github.event.client_payload.github.payload.issue.number }} | |
| steps: | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@main | |
| with: | |
| verbose: true | |
| - uses: actions/checkout@v3 | |
| - name: Set defaults for all inputs | |
| id: defs | |
| run: | | |
| SRCURL=${{ github.event.client_payload.slash_command.args.named.source || '' }} | |
| if [ -z "$SRCURL" ]; then | |
| SRCURL="https://github.com/${{github.repository}}/issues/$ISSUE_NUM" | |
| SRCDIR="" | |
| else | |
| SRCDIR=$(basename $SRCURL) | |
| fi | |
| echo source=$SRCURL >> $GITHUB_OUTPUT | |
| IDINPUT=${{ github.event.client_payload.slash_command.args.named.id || 'error' }} | |
| echo id=$IDINPUT >> $GITHUB_OUTPUT | |
| echo title=${{ github.event.client_payload.slash_command.args.named.title || 'No title' }} >> $GITHUB_OUTPUT | |
| echo description=${{ github.event.client_payload.slash_command.args.named.description || '' }} >> $GITHUB_OUTPUT | |
| echo section=${{ github.event.client_payload.slash_command.args.named.section || 'Others' }} >> $GITHUB_OUTPUT | |
| echo docker=${{ github.event.client_payload.slash_command.args.named.docker || '' }} >> $GITHUB_OUTPUT | |
| echo port=${{ github.event.client_payload.slash_command.args.named.port || '8787' }} >> $GITHUB_OUTPUT | |
| echo precommand="${{ github.event.client_payload.slash_command.args.named.precommand || '' }}" >> $GITHUB_OUTPUT | |
| echo fileskeep="${{ github.event.client_payload.slash_command.args.named.keepsource || 'TRUE' }}" >> $GITHUB_OUTPUT | |
| STARTFILE=${{ github.event.client_payload.slash_command.args.named.startfile || '' }} | |
| echo startfile=$STARTFILE >> $GITHUB_OUTPUT | |
| CMDSTRING=${{ github.event.client_payload.slash_command.args.named.command }} | |
| if [ -z $CMDSTRING ]; then | |
| ORIGCMD='echo "{ \"visual_markdown_editing_is_default\": true }" > /etc/rstudio/rstudio-prefs.json && echo "setwd(\"/home/rstudio\"); setHook(\"rstudio.sessionInit\", function(newSession) { if (newSession) rstudioapi::filesPaneNavigate(getwd()) }, action = \"append\")" > /home/rstudio/.Rprofile; /init'; | |
| CMDSTRING="$ORIGCMD" | |
| if [ ! -z $STARTFILE ]; then | |
| STARTPATH=$STARTFILE | |
| if [ ! -z $SRCDIR ]; then | |
| STARTPATH="$SRCDIR/$STARTFILE" | |
| fi | |
| APPENDCMD='export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f \\"/home/rstudio/PLACEHOLDERSTARTPATH\\" ]; then echo \\"/home/rstudio/PLACEHOLDERSTARTPATH\\" > /tmp/startfile; else echo \\"/home/rstudio/PLACEHOLDERSTARTFILE\\" > /tmp/startfile; fi' | |
| APPENDSTART=$(echo "$APPENDCMD" | sed "s@PLACEHOLDERSTARTPATH@$STARTPATH@g" | sed "s@PLACEHOLDERSTARTFILE@$STARTFILE@g") | |
| CMDSTRING=$(echo "$APPENDSTART ; $ORIGCMD" | sed 's#(getwd())#(\\"\\\\$(dirname \\\\$(cat /tmp/startfile))\\"); rstudioapi::navigateToFile(\\"\\\\$(cat /tmp/startfile)\\")#g') | |
| fi | |
| fi | |
| echo command=$CMDSTRING >> $GITHUB_OUTPUT | |
| echo pkglist=${{ github.event.client_payload.slash_command.args.named.pkglist || '' }} >> $GITHUB_OUTPUT | |
| echo vignettes=${{ github.event.client_payload.slash_command.args.named.vignettes || '' }} >> $GITHUB_OUTPUT | |
| rm -f generated/${IDINPUT}.* | |
| - name: Install Helm | |
| run: curl https://raw.githubusercontent.com/helm/helm/master/scripts/get-helm-3 | bash | |
| - name: save kubeconfig | |
| shell: bash | |
| run: mkdir -p ~/.kube && echo "${{ secrets.TEST_KUBECONFIG }}" > ~/.kube/config | |
| - name: Install Kubectl | |
| run: curl -LO "https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl" && chmod +x ./kubectl && sudo mv ./kubectl /usr/local/bin/kubectl && kubectl version | |
| - name: Get Current Job Log URL | |
| uses: Tiryoh/gha-jobid-action@v0 | |
| id: jobs | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| job_name: "Deploy values to test" | |
| per_page: 100 | |
| - name: Deploy | |
| id: request | |
| run: | | |
| ID='${{steps.defs.outputs.id}}' | |
| bash .github/scripts/request.sh -i "$ID" -t '${{steps.defs.outputs.title}}' -d '${{steps.defs.outputs.description}}' -s '${{steps.defs.outputs.section}}' -u '${{steps.defs.outputs.source}}' -c '${{steps.defs.outputs.docker}}' -p '${{steps.defs.outputs.port}}' -m '${{steps.defs.outputs.command}}' -k '${{steps.defs.outputs.pkglist}}' -v '${{steps.defs.outputs.vignettes}}' -b '${{steps.defs.outputs.startfile}}' -e "${{steps.defs.outputs.precommand}}" -f "${{steps.defs.outputs.fileskeep}}" | |
| continue-on-error: true | |
| - name: Create comment | |
| uses: peter-evans/create-or-update-comment@v3 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| issue-number: ${{ github.event.client_payload.github.payload.issue.number }} | |
| body: | | |
| _AUTO-GENERATED RESPONSE_ | |
| [Action Log](${{ steps.jobs.outputs.html_url }}) | |
| Your request has passed initial checks and is being built and/or deployed to the test instance. | |
| Please wait further updates. | |
| if: steps.request.outcome=='success' | |
| - name: Create comment | |
| uses: peter-evans/create-or-update-comment@v3 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| issue-number: ${{ github.event.client_payload.github.payload.issue.number }} | |
| body: | | |
| _AUTO-GENERATED RESPONSE_ | |
| [Action Log](${{ steps.jobs.outputs.html_url }}) | |
| Your request has failed preliminary checks. Please make sure a corresponding `/request` command passes. | |
| if: steps.request.outcome=='failure' | |
| - name: Login to GHCR | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Deploy | |
| id: deploy | |
| run: | | |
| ID='${{steps.defs.outputs.id}}' | |
| bash .github/scripts/build.sh '${{steps.defs.outputs.id}}' | |
| # Redo request with container in case it was just built | |
| bash .github/scripts/request.sh -i "$ID" -t '${{steps.defs.outputs.title}}' -d '${{steps.defs.outputs.description}}' -s '${{steps.defs.outputs.section}}' -u '${{steps.defs.outputs.source}}' -c "$(cat generated/$ID.container)" -p '${{steps.defs.outputs.port}}' -m '${{steps.defs.outputs.command}}' | |
| bash .github/scripts/deploy.sh -i "$ID" -s '${{steps.defs.outputs.section}}' | |
| continue-on-error: true | |
| - name: Create comment | |
| uses: peter-evans/create-or-update-comment@v3 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| issue-number: ${{ github.event.client_payload.github.payload.issue.number }} | |
| body: | | |
| _AUTO-GENERATED RESPONSE_ | |
| [Action Log](${{ steps.jobs.outputs.html_url }}) | |
| Your workshop has been successfully deployed to the [test instance](https://workshop.bioconductor.org). :sparkles: | |
| Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance. | |
| if: steps.request.outcome=='success' && steps.deploy.outcome=='success' | |
| - name: Create comment | |
| uses: peter-evans/create-or-update-comment@v3 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| issue-number: ${{ github.event.client_payload.github.payload.issue.number }} | |
| body: | | |
| _AUTO-GENERATED RESPONSE_ | |
| [Action Log](${{ steps.jobs.outputs.html_url }}) | |
| Your request has been received but is currently failing its deployment on test. | |
| If the corresponding `/request` command has passed with the same parameters, this is likely a bug. | |
| if: steps.request.outcome=='failure' || steps.deploy.outcome=='failure' | |
| - run: "cp -r generated /tmp" | |
| - name: Push generated | |
| uses: nick-fields/retry@v2 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 50 | |
| shell: bash | |
| command: | | |
| set -x | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git pull origin main || git reset --hard origin/main | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| cp -r /tmp/generated ./ | |
| git add ./generated | |
| git commit -m "Push generated ${{steps.defs.outputs.id}}" | |
| git push |