Skip to content
@BioinfoMachineLearning

BioinfoMachineLearning

Popular repositories Loading

  1. bio-diffusion bio-diffusion Public

    A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)

    Python 188 26

  2. PoseBench PoseBench Public

    Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)

    Jupyter Notebook 117 3

  3. FlowDock FlowDock Public

    Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)

    Python 72 7

  4. cryoppp cryoppp Public

    The programs of creating cryo-EM particle picking datasets

    Python 69 5

  5. DeepInteract DeepInteract Public

    A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)

    Python 63 11

  6. DIPS-Plus DIPS-Plus Public

    The Enhanced Database of Interacting Protein Structures for Interface Prediction

    Python 48 8

Repositories

Showing 10 of 40 repositories
  • MULTICOM_ligand Public

    Comprehensive ensembling of protein-ligand structure and affinity prediction methods (CASP16)

    BioinfoMachineLearning/MULTICOM_ligand’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Feb 9, 2025
  • PoseBench Public

    Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)

    BioinfoMachineLearning/PoseBench’s past year of commit activity
    Jupyter Notebook 117 MIT 3 0 0 Updated Feb 9, 2025
  • Cryo2Strut2 Public

    The second version of Cryo2Struct for reconstructing protein structures from cryo-EM density maps

    BioinfoMachineLearning/Cryo2Strut2’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 9, 2025
  • gate Public

    Graph transformer for estimating protein model accuracy

    BioinfoMachineLearning/gate’s past year of commit activity
    C 0 0 0 0 Updated Feb 9, 2025
  • GRNformer Public

    Transformer models for predicting gene regulatory networks from omics data

    BioinfoMachineLearning/GRNformer’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jan 29, 2025
  • FlowDock Public

    Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)

    BioinfoMachineLearning/FlowDock’s past year of commit activity
    Python 72 MIT 7 0 0 Updated Jan 24, 2025
  • hicdiff Public

    Diffusion models for denoising Hi-C chromosome conformation capturing data

    BioinfoMachineLearning/hicdiff’s past year of commit activity
    Python 3 MIT 0 2 0 Updated Jan 21, 2025
  • TransFew Public

    Transformer for protein function prediction (version 2)

    BioinfoMachineLearning/TransFew’s past year of commit activity
    Jupyter Notebook 11 MIT 0 1 0 Updated Dec 20, 2024
  • MULTICOM4 Public

    The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia

    BioinfoMachineLearning/MULTICOM4’s past year of commit activity
    Python 4 1 0 0 Updated Dec 18, 2024
  • GCDM-SBDD Public

    A geometry-complete diffusion generative model (GCDM) for structure-based drug design (Nature CommsChem)

    BioinfoMachineLearning/GCDM-SBDD’s past year of commit activity
    Python 11 MIT 3 0 0 Updated Nov 6, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…