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Image path when creating st object from other packages #303

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je71xusa opened this issue Jul 3, 2024 · 0 comments
Open

Image path when creating st object from other packages #303

je71xusa opened this issue Jul 3, 2024 · 0 comments

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@je71xusa
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je71xusa commented Jul 3, 2024

Hi stlearn team.

I just started trying your package out and have a question about the image_path parameter in create_stlearn.
I tried importing everything from a seurat object and everything is working except for the image_path. It does not allign with the spots and instead the image is just at top left corner.

Thus, I wanted to ask how create_stlearn alligns the image to the spots? What format or information does it need to correctly allign spots to image?

If I missed this information in the documentation I apologize and would be thankful if you send me a link or screenshot with the information.

Thank you!

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