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26 Open 143 Closed
26 Open 143 Closed
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Issues list

How to distinguish between sender spots and receiver spots? stlearn distance =200
#315 opened Nov 18, 2024 by smk5g5
Import H&E Image for Xenium
#314 opened Oct 24, 2024 by ChenlingTangMDA
ValueError in stlearn.Read10X step
#313 opened Oct 8, 2024 by TLC199676
Cell to cell interaction: required data
#312 opened Sep 24, 2024 by JestlinNg
Import issue
#311 opened Sep 16, 2024 by elmir-ma
st.spatial.SME.SME_normalize: ValueError: Input X contains NaN.
#310 opened Sep 9, 2024 by liangyuli12138
CCI Maps might have reversed axis labels!
#309 opened Jul 30, 2024 by je71xusa
1
Error when running st.pl.cluster_plot
#307 opened Jul 23, 2024 by kevin198930
Running time of PTST analysis for Xenium data
#306 opened Jul 18, 2024 by Ferris01
2
"InvalidIndexError: Reindexing only valid with uniquely valued Index objects" when running st.tl.cci.run with custom LR set
#305 opened Jul 15, 2024 by je71xusa
Gridding visualization with h&e image out of frame
#304 opened Jul 3, 2024 by Rabitta99
Image path when creating st object from other packages
#303 opened Jul 3, 2024 by je71xusa
[Help please] Integrate multiple spatial transcriptomics datasets is not working!
#302 opened Jul 2, 2024 by MatteoRiva95
1
visium HD application
#301 opened Jul 1, 2024 by revolvefire
1
numba.core.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend)
#300 opened Jun 18, 2024 by tangsanpang2
Clarification on Directionality in stLearn CCI Plots
#299 opened Jun 18, 2024 by gity123987
2
Handling Large Datasets in stLearn and the Impact on Computational Performance
#298 opened Jun 18, 2024 by gity123987
label_transfer_bc.csv
#297 opened Jun 11, 2024 by oabuhuss
using stlearn for the first time.
#296 opened Jun 6, 2024 by oabuhuss
1
A problem of quantifying the interaction between two specific cell types and doing spatial mapping
#294 opened Jun 4, 2024 by XianLZ2301
2
Installation issue with version conflicts
#293 opened May 30, 2024 by Huyuling1
5
Installation issues on linux machine
#291 opened Apr 18, 2024 by chiwwong
5
How does stlearn calculates the number of L-R pairs of celltype
#288 opened Mar 17, 2024 by caiquanyou
1
Question about st.spatial.trajectory.compare_transitions
#286 opened Mar 8, 2024 by zyy23
1
min_spots vs. the number of total spots in many different lib-size 10x Visium samples
#283 opened Feb 8, 2024 by cjhong
@BradBalderson
1
ProTip! Follow long discussions with comments:>50.