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I was using you package when I realized that the CCI Maps show a reverse direction for the the interaction. So I checked in you documentation and there it seems to be the same. Example using THBS1_ITGB1 from your documentation: https://stlearn.readthedocs.io/en/stable/tutorials/stLearn-CCI.html
If you focus on Stroma -> Mesenchymal in the network plot there is only one direction from stroma to mesenchymal:
This is also the case in the chord-plot and LR-CC-Map:
But in the CCI Map there is a dot shown from mesenchymal as sender and stroma as receiver while the reverse is missing:
Am I missing something here or did the labels in the CCI Map just get swapped?
I hope you can clarify this for me. Thank you!
Edit:
Just realized there is already another issue of this: #299
The text was updated successfully, but these errors were encountered:
Hello there stlearn team,
I was using you package when I realized that the CCI Maps show a reverse direction for the the interaction. So I checked in you documentation and there it seems to be the same. Example using THBS1_ITGB1 from your documentation: https://stlearn.readthedocs.io/en/stable/tutorials/stLearn-CCI.html
If you focus on Stroma -> Mesenchymal in the network plot there is only one direction from stroma to mesenchymal:
This is also the case in the chord-plot and LR-CC-Map:
But in the CCI Map there is a dot shown from mesenchymal as sender and stroma as receiver while the reverse is missing:
Am I missing something here or did the labels in the CCI Map just get swapped?
I hope you can clarify this for me. Thank you!
Edit:
Just realized there is already another issue of this: #299
The text was updated successfully, but these errors were encountered: