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Update docs/BIOI611_scRNA_seq_cele_cellranger.ipynb #78

Update docs/BIOI611_scRNA_seq_cele_cellranger.ipynb

Update docs/BIOI611_scRNA_seq_cele_cellranger.ipynb #78

Workflow file for this run

name: mkdocs # (1)!
on:
push:
branches:
- main
paths:
- 'mkdocs.yaml'
- 'notebook/**'
- 'docs/**'
permissions:
contents: write
jobs:
deploy:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Configure Git Credentials
run: |
git config user.name github-actions[bot]
git config user.email 41898282+github-actions[bot]@users.noreply.github.com
- uses: actions/setup-python@v5
with:
python-version: 3.x
- run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV # (3)!
- uses: actions/cache@v4
with:
key: BIOI611_lab-${{ env.cache_id }}
path: .cache
restore-keys: |
mkdocs-material-
- run: pip install mkdocs-material # (4)!
- run: pip install jupyterlab==4.1.1
- run: pwd & ls
- run: find docs/ -not -path "*.ipynb_checkpoints*" -name "*.ipynb" -exec jupyter nbconvert --to markdown --output-dir docs/ {} \;
- run: pwd & ls docs/
- run: mkdocs gh-deploy --force --remote-branch gh-pages # mkdocs gh-deploy --force