v1.0.3

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: immApex
 Title: Tools for Adaptive Immune Receptor Sequence-Based Keras3 Modeling
-Version: 1.0.2
-Date: 2024-11-1
+Version: 1.0.3
+Date: 2024-11-4
 Authors@R: c(
     person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "[email protected]"))
 Description: A set of tools to build tensorflow/keras3-based models in R from amino acid and nucleotide sequences focusing on adaptive immune receptors. The package includes pre-processing of sequences, unifying gene nomenclature usage, encoding sequences, and combining models. This package will serve as the basis of future immune receptor sequence functions/packages/models compatible with the scRepertoire ecosystem.

NEWS.md

@@ -1,3 +1,9 @@
+# immApex VERSION 1.0.3
+
+## UNDERLYING CHANGES
+* Drop evaluation of variationalSequences() example
+
+
 # immApex VERSION 1.0.2
 
 ## UNDERLYING CHANGES

R/variationalSequences.R

@@ -4,6 +4,7 @@
 #' autoencoder (VAE) and perturbation of the probability distributions.
 #' 
 #' @examples
+#' \dontrun{
 #' sequences <- generateSequences(prefix.motif = "CAS",
 #'                                suffix.motif = "YF",
 #'                                number.of.sequences = 100,
@@ -15,6 +16,7 @@
 #'                                       encoder.hidden.dim = c(256, 128),
 #'                                       latent.dim = 16,
 #'                                       batch.size = 16)
+#' } 
 #' 
 #' @param input.sequences The amino acid or nucleotide sequences to use
 #' @param encoder.function The method to prepare the sequencing information -