Releases: BradBalderson/Cytocipher
Releases · BradBalderson/Cytocipher
Cytocipher optimised
Bug fixes and speed optimisations, namely Numba and smarter datastructure usage at bottle-necks.
Cytocipher MNN
Added pip installation, and also flexible MNN determination by letting the user run sc.tl.neighbors first, and then using this to determine the cluster-level MNNs.
Cytocipher Bioarchived v2
Added updating p-value cutoffs without needed to re-calculate many key statistics.
Added extra diagnostic plots (sankey diagram, volcano plot, bias checks).
Cytocipher bioarchived
Initial version used to produce results in the bioarchived paper.