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Updated fMRI data set subclasses #18

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Updated fMRI data set subclasses #18

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Updated fMRI data set subclasses
AlexT01010100 Jul 25, 2024
dbe8ab5
Updated BOLD/VASO/ASL fMRI data set subclasses
AlexT01010100 Aug 15, 2024
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204 changes: 200 additions & 4 deletions src/ontology/MRIO-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -365,6 +365,16 @@



<!-- http://purl.obolibrary.org/obo/MF_0000008 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MF_0000008">
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-09T20:33:47Z</dc:date>
<rdfs:label xml:lang="en">cognitive process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_0000341 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_0000341">
Expand Down Expand Up @@ -520,7 +530,6 @@
<IAO_0000117>https://orcid.org/0000-0001-9676-7377 &quot;Alexander D. Bartnik&quot;</IAO_0000117>
<IAO_0000117>https://orcid.org/0000-0001-9990-8331 &quot;Alexander D. Diehl&quot;</IAO_0000117>
<IAO_0000117>https://orcid.org/0000-0002-2104-0568 &quot;Lucas M. Serra&quot;</IAO_0000117>
<IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/OBI_0003337"/>
<rdfs:label>obsolete Resting state functional magnetic resonance image data set</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
Expand All @@ -534,7 +543,6 @@
<IAO_0000117>https://orcid.org/0000-0001-9676-7377 &quot;Alexander D. Bartnik&quot;</IAO_0000117>
<IAO_0000117>https://orcid.org/0000-0001-9990-8331 &quot;Alexander D. Diehl&quot;</IAO_0000117>
<IAO_0000117>https://orcid.org/0000-0002-2104-0568 &quot;Lucas M. Serra&quot;</IAO_0000117>
<IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/OBI_0003338"/>
<rdfs:label>obsolete Task-based functional magnetic resonance image data set</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
Expand Down Expand Up @@ -4970,17 +4978,205 @@ The values often belong to a group of pixels or voxels that share the same chara



<!-- http://purl.obolibrary.org/obo/MRIO_70c96d29_5436_43de_b9ac_d85cea3f2ead -->
<!-- http://purl.obolibrary.org/obo/MRIO_1000034 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_70c96d29_5436_43de_b9ac_d85cea3f2ead">
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_0000686"/>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-09T19:59:31Z</dc:date>
<rdfs:label xml:lang="en">arterial spin labeling functional MRI acquisition sequence</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000039 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_0000686"/>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-09T19:59:51Z</dc:date>
<rdfs:label xml:lang="en">vascular space occupancy functional MRI acquisition sequence</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000040 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_0000686"/>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-09T20:00:10Z</dc:date>
<rdfs:label xml:lang="en">blood oxygenation level dependent functional MRI acquisition sequence</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000041 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000041">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003336"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000034"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<IAO_0000115>A functional magnetic resonance image data set that utilizes arterial spin labeling (ASL).</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-24T16:37:31Z</dc:date>
<oboInOwl:hasExactSynonym>ASL functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">arterial spin labeling functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000042 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000042">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000041"/>
<IAO_0000115>A type of arterial spin labeling (ASL) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-24T23:50:47Z</dc:date>
<oboInOwl:hasExactSynonym>ASL resting state functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">arterial spin labeling resting state functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000043 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000043">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/MRIO_1000041"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000007"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MF_0000008"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000041"/>
<IAO_0000115>A type of arterial spin labeling (ASL) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-24T23:53:17Z</dc:date>
<oboInOwl:hasExactSynonym>ASL task-based functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">arterial spin labeling task-based functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000044 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<IAO_0000115>A functional magnetic resonance image data set that utilizes blood oxygenation level dependent (BOLD) contrast.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-24T23:33:43Z</dc:date>
<oboInOwl:hasExactSynonym>BOLD functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">blood oxygenation level dependent functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000045 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000044"/>
<IAO_0000115>A type of blood oxygenation level dependent (BOLD) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-25T00:11:14Z</dc:date>
<oboInOwl:hasExactSynonym>BOLD resting state functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">blood oxygenation level dependent resting state functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000046 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000044"/>
<IAO_0000115>A type of blood oxygenation level dependent (BOLD) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-25T00:11:54Z</dc:date>
<oboInOwl:hasExactSynonym>BOLD task-based functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">blood oxygenation level dependent task-based functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000047 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<IAO_0000115>A functional magnetic resonance image data set that utilizes vascular space occupancy (VASO) contrast.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-24T23:33:06Z</dc:date>
<oboInOwl:hasExactSynonym>VASO functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">vascular space occupancy functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000048 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000048">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000047"/>
<IAO_0000115>A type of vascular space occupancy (VASO) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-25T00:14:36Z</dc:date>
<oboInOwl:hasExactSynonym>VASO resting state functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">vascular space occupancy resting state functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_1000049 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_1000049">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MRIO_1000047"/>
<IAO_0000115>A type of vascular space occupancy (VASO) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-25T00:14:44Z</dc:date>
<oboInOwl:hasExactSynonym>VASO task-based functional magnetic resonance image data set</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">vascular space occupancy task-based functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_7dbd9af6_10a6_4e84_a4b3_648d4c0575de -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_7dbd9af6_10a6_4e84_a4b3_648d4c0575de">
<IAO_0000115>A type of blood oxygenation level dependent event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards.</IAO_0000115>
<dc:creator rdf:resource="https://orcid.org/0009-0004-2155-902X"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-07-25T03:29:43Z</dc:date>
<rdfs:label xml:lang="en">blood oxygenation level dependent rapid event-related functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MRIO_a535096d_151b_47c9_9be4_83b7799917df -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MRIO_a535096d_151b_47c9_9be4_83b7799917df">
Expand Down
38 changes: 2 additions & 36 deletions src/ontology/imports/obi_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/MRIO/imports/obi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/MRIO/releases/2024-05-29/imports/obi_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/obi/2024-01-09/obi.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-05-29</owl:versionInfo>
<owl:versionInfo>2024-05-29</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -4785,40 +4785,6 @@ In regard to the statement that reagents are &apos;distinct&apos; from the speci



<!-- http://purl.obolibrary.org/obo/OBI_0003337 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003337">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<obo:IAO_0000111>resting state functional magnetic resonance image data set</obo:IAO_0000111>
<obo:IAO_0000112>An fMRI used for assessing functional connectivity of brain regions at rest.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A type of functional MRI in which the participant is not given a task, but just rests during acquisision</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 &quot;Alexander D. Bartnik&quot;</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 &quot;Alexander D. Diehl&quot;</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 &quot;Lucas M. Serra&quot;</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>resting state functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003338 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003338">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003336"/>
<obo:IAO_0000111>task-based functional magnetic resonance image data set</obo:IAO_0000111>
<obo:IAO_0000112>fMRI type used for assessing brain activity while performing an action or in response to stimuli.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A type of functional MRI in which the participant is given a task or tasks, which are timed with the acquisition</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-9676-7377 &quot;Alexander D. Bartnik&quot;</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0001-9990-8331 &quot;Alexander D. Diehl&quot;</obo:IAO_0000117>
<obo:IAO_0000117>https://orcid.org/0000-0002-2104-0568 &quot;Lucas M. Serra&quot;</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1481</obo:IAO_0000233>
<rdfs:label>task-based functional magnetic resonance image data set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003339 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003339">
Expand Down Expand Up @@ -10242,5 +10208,5 @@ realizes some &apos;host of immune response role&apos;</obo:IAO_0000232>



<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi -->

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