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@CAREamics

CAREamics

README.md

CAREamics

CAREamics is a PyTorch library aimed at simplifying the use of Noise2Void and its many variants and cousins (CARE, Noise2Noise, N2V2, P(P)N2V, HDN, muSplit etc.).

Why CAREamics?

Noise2Void is a widely used denoising algorithm, and is readily available from the n2v python package. However, n2v is based on TensorFlow and Keras, and our more recent methods (PPN2V, DivNoising, HDN) are all implemented in PyTorch, but are lacking the extra features that would make them usable by the community.

The aim of CAREamics is to provide a PyTorch library reuniting all the latest methods in one package, while providing a simple and consistent API. The library relies on PyTorch Lightning as a back-end. In addition, we will provide extensive documentation and tutorials on how to best apply these methods in a scientific context.

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  1. careamics careamics Public

    A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and documentation.)

    Python 39 6

  2. careamics-napari careamics-napari Public

    napari plugin for CAREamics

    Python 3 1

  3. careamics-portfolio careamics-portfolio Public

    A helper package to download example datasets used in various publications by the Jug lab, including data featured in N2V, P(P)N2V, DivNoising, HDN, EmbedSeg, etc.

    Python

Repositories

Showing 10 of 11 repositories
  • careamics Public

    A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and documentation.)

    CAREamics/careamics’s past year of commit activity
    Python 39 BSD-3-Clause 6 40 7 Updated Dec 23, 2024
  • careamics.github.io Public
    CAREamics/careamics.github.io’s past year of commit activity
    Python 0 BSD-3-Clause 2 15 0 Updated Dec 22, 2024
  • microSplit-reproducibility Public

    A repository containing notebooks and scripts for reproducing results and figures for microSplit paper

    CAREamics/microSplit-reproducibility’s past year of commit activity
    Jupyter Notebook 1 2 1 2 Updated Dec 19, 2024
  • careamics-feedstock Public Forked from conda-forge/careamics-feedstock

    A conda-smithy repository for careamics.

    CAREamics/careamics-feedstock’s past year of commit activity
    0 BSD-3-Clause 2 0 0 Updated Dec 18, 2024
  • careamics-examples Public

    Examples and code snippets for CAREamics

    CAREamics/careamics-examples’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 3 1 Updated Dec 18, 2024
  • careamics-napari Public

    napari plugin for CAREamics

    CAREamics/careamics-napari’s past year of commit activity
    Python 3 BSD-3-Clause 1 7 1 Updated Dec 6, 2024
  • careamics-conda-recipe Public Forked from conda-forge/staged-recipes

    CAREamics conda recipe.

    CAREamics/careamics-conda-recipe’s past year of commit activity
    Python 0 BSD-3-Clause 5,052 0 0 Updated Dec 5, 2024
  • nf-core-modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community! Forked to develop CAREamics modules

    CAREamics/nf-core-modules’s past year of commit activity
    Nextflow 0 MIT 739 0 0 Updated Dec 5, 2024
  • careamics-portfolio Public

    A helper package to download example datasets used in various publications by the Jug lab, including data featured in N2V, P(P)N2V, DivNoising, HDN, EmbedSeg, etc.

    CAREamics/careamics-portfolio’s past year of commit activity
    Python 0 BSD-3-Clause 0 5 2 Updated Dec 2, 2024
  • .github Public

    Organization README

    CAREamics/.github’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Nov 12, 2024
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