Merge pull request #846 from CannonLock/preview-chtc-htc-rework

Update HTC/HPC Guide Pages

.github/workflows/test-links.yml

@@ -6,6 +6,6 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: CannonLock/test_links@master
+      - uses: CHTC/test_links@master
         with:
           file_ignore: "/./staff/.*/,/./includes/.*/,/./doc/.*/"

_data/hpc-guide-menu.yml

@@ -0,0 +1,100 @@
+- text: "Get started"
+  icon: "bi bi-rocket-takeoff"
+  links:
+    - text: "HPC system transition to a new Linux Version (CentOS Stream 9)"
+      url: "/uw-research-computing/archived/hpc-el8-to-el9"
+      icon: ""
+      highlight: true
+    - text: "CHTC /staging and /projects next steps"
+      url: "/uw-research-computing/data-recovery-fall2024"
+      icon: ""
+      highlight: true
+    - text: "System overview"
+      url: "/uw-research-computing/hpc-overview"
+      icon: ""
+    - text: "Log in to CHTC"
+      url: "/uw-research-computing/connecting"
+      icon: ""
+    - text: "Automate CHTC login"
+      url: "/uw-research-computing/configure-ssh"
+      icon: ""
+    - text: "Basic shell commands"
+      url: "/uw-research-computing/basic-shell-commands"
+      icon: ""
+
+- text: "Submit jobs"
+  icon: "bi bi-send"
+  links:
+    - text: "Submitting and managing jobs using SLURM"
+      url: "/uw-research-computing/hpc-job-submission"
+      icon: ""
+    - text: "Reviewing job information using SLURM"
+      url: "/uw-research-computing/hpc-job-monitoring"
+      icon: ""
+
+- text: "Manage data"
+  icon: "bi bi-file-earmark-text"
+  links:
+    - text: "Transfer files to/from CHTC"
+      icon: ""
+      links:
+        - text: "Local computer"
+          url: "/uw-research-computing/transfer-files-computer"
+          icon: ""
+        - text: "ResearchDrive"
+          url: "/uw-research-computing/transfer-data-researchdrive"
+          icon: ""
+        - text: "Private GitHub repo"
+          url: "/uw-research-computing/github-remote-access"
+          icon: ""
+
+- text: "Software"
+  icon: "bi bi-pc-display"
+  links:
+    - text: "Overview and Policies"
+      url: "/uw-research-computing/hpc-software"
+      icon: ""
+    - text: "Spack"
+      icon: ""
+      links:
+        - text: "Set up"
+          url: "/uw-research-computing/hpc-spack-setup"
+          icon: ""
+        - text: "Install software"
+          url: "/uw-research-computing/hpc-spack-install"
+          icon: ""
+        - text: "Create custom modules"
+          url: "/uw-research-computing/hpc-spack-modules"
+          icon: ""
+        - text: "Recreate Spack installs on a new operating system"
+          url: "/uw-research-computing/hpc-el9-spack"
+          icon: ""
+    - text: "Containers"
+      icon: ""
+      links:
+        - text: "Use Apptainer containers"
+          url: "/uw-research-computing/apptainer-hpc"
+          icon: ""
+        - text: "Build an Apptainer container"
+          url: "/uw-research-computing/apptainer-build"
+          icon: ""
+
+- text: "Troubleshooting"
+  icon: "bi bi-question-circle"
+  links:
+    - text: "Known issues on the HPC"
+      url: "/uw-research-computing/hpc-known-issues"
+      icon: ""
+
+- text: "External resources"
+  icon: "bi bi-box-arrow-up-right"
+  links:
+    - text: "Slurm manual"
+      url: "http://slurm.schedmd.com/"
+      icon: ""
+    - text: "Software Carpentry"
+      url: "http://software-carpentry.org/lessons/"
+      icon: ""
+    - text: "UW-Madison software training for students"
+      url: "http://www.doit.wisc.edu/training/student/"
+      icon: ""