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Update HTC Guide Page #846

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Jan 17, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/test-links.yml
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,6 @@ jobs:
runs-on: ubuntu-latest

steps:
- uses: CannonLock/test_links@master
- uses: CHTC/test_links@master
with:
file_ignore: "/./staff/.*/,/./includes/.*/,/./doc/.*/"
10 changes: 0 additions & 10 deletions _data/guide-menu.yaml

This file was deleted.

108 changes: 0 additions & 108 deletions _data/guide-menu.yml

This file was deleted.

100 changes: 100 additions & 0 deletions _data/hpc-guide-menu.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,100 @@
- text: "Get started"
icon: "bi bi-rocket-takeoff"
links:
- text: "HPC system transition to a new Linux Version (CentOS Stream 9)"
url: "/uw-research-computing/archived/hpc-el8-to-el9"
icon: ""
highlight: true
- text: "CHTC /staging and /projects next steps"
url: "/uw-research-computing/data-recovery-fall2024"
icon: ""
highlight: true
- text: "System overview"
url: "/uw-research-computing/hpc-overview"
icon: ""
- text: "Log in to CHTC"
url: "/uw-research-computing/connecting"
icon: ""
- text: "Automate CHTC login"
url: "/uw-research-computing/configure-ssh"
icon: ""
- text: "Basic shell commands"
url: "/uw-research-computing/basic-shell-commands"
icon: ""

- text: "Submit jobs"
icon: "bi bi-send"
links:
- text: "Submitting and managing jobs using SLURM"
url: "/uw-research-computing/hpc-job-submission"
icon: ""
- text: "Reviewing job information using SLURM"
url: "/uw-research-computing/hpc-job-monitoring"
icon: ""

- text: "Manage data"
icon: "bi bi-file-earmark-text"
links:
- text: "Transfer files to/from CHTC"
icon: ""
links:
- text: "Local computer"
url: "/uw-research-computing/transfer-files-computer"
icon: ""
- text: "ResearchDrive"
url: "/uw-research-computing/transfer-data-researchdrive"
icon: ""
- text: "Private GitHub repo"
url: "/uw-research-computing/github-remote-access"
icon: ""

- text: "Software"
icon: "bi bi-pc-display"
links:
- text: "Overview and Policies"
url: "/uw-research-computing/hpc-software"
icon: ""
- text: "Spack"
icon: ""
links:
- text: "Set up"
url: "/uw-research-computing/hpc-spack-setup"
icon: ""
- text: "Install software"
url: "/uw-research-computing/hpc-spack-install"
icon: ""
- text: "Create custom modules"
url: "/uw-research-computing/hpc-spack-modules"
icon: ""
- text: "Recreate Spack installs on a new operating system"
url: "/uw-research-computing/hpc-el9-spack"
icon: ""
- text: "Containers"
icon: ""
links:
- text: "Use Apptainer containers"
url: "/uw-research-computing/apptainer-hpc"
icon: ""
- text: "Build an Apptainer container"
url: "/uw-research-computing/apptainer-build"
icon: ""

- text: "Troubleshooting"
icon: "bi bi-question-circle"
links:
- text: "Known issues on the HPC"
url: "/uw-research-computing/hpc-known-issues"
icon: ""

- text: "External resources"
icon: "bi bi-box-arrow-up-right"
links:
- text: "Slurm manual"
url: "http://slurm.schedmd.com/"
icon: ""
- text: "Software Carpentry"
url: "http://software-carpentry.org/lessons/"
icon: ""
- text: "UW-Madison software training for students"
url: "http://www.doit.wisc.edu/training/student/"
icon: ""
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