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Update sleap.def #15

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4 changes: 2 additions & 2 deletions software/SLEAP/README.md
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Expand Up @@ -31,6 +31,6 @@ Program overview: https://sleap.ai/index.html
| *Type* | **Apptainer** | |
| *OS* | Ubuntu | |
| *Base image* | **condaforge/miniforge3:latest** | *DockerHub* |
| *Updated* | 2024-02-23 | *Andrew Owen* |
| *Last tested on HTC* | - | - |
| *Updated* | 2024-09-27 | *Amber Lim* |
| *Last tested on HTC* | 2024-09-23 | *Amber Lim* |
| *Last tested on HPC* | - | - |
7 changes: 4 additions & 3 deletions software/SLEAP/sleap.def
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Expand Up @@ -5,10 +5,11 @@ From: condaforge/miniforge3:latest
# Install some shared library requirements
export DEBIAN_FRONTEND=noninteractive
apt update -y
apt install -y ffmpeg libsm6 libxext6
apt install -y ffmpeg libsm6 libxext6 libc6 git

# Install Sleap
mamba create -y -n sleap -c conda-forge -c nvidia -c sleap -c anaconda sleap=1.3.3
# Install Sleap from git
git clone https://github.com/talmolab/sleap && cd sleap
mamba env create -f environment.yml -n sleap

# Activate environment when starting container
cat << EOF > $APPTAINER_ENVIRONMENT
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