Merge Split Branch

CHTC · Apr 26, 2024 · 7c9b2c0 · 7c9b2c0
2 parents 330f465 + 1f02cc8
commit 7c9b2c0
Show file tree

Hide file tree

Showing 4 changed files with 143 additions and 49 deletions.
diff --git a/preview-aowen-software-overview/assets/search/index.json b/preview-aowen-software-overview/assets/search/index.json
diff --git a/preview-aowen-software-overview/assets/search/metadata.json b/preview-aowen-software-overview/assets/search/metadata.json
diff --git a/preview-aowen-software-overview/uw-research-computing/hpc/guides.html b/preview-aowen-software-overview/uw-research-computing/hpc/guides.html
@@ -282,17 +282,29 @@ <h2 id="hpc-documentation">HPC Documentation</h2>
 						<h4 class="mt-0 mx-auto">Basics and Policies</h4>
 					</div>
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-overview" class="list-group-item list-group-item-action ">HPC Cluster Overview</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-overview" class="list-group-item list-group-item-action ">HPC Cluster Overview</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/connecting" class="list-group-item list-group-item-action ">Connect to CHTC</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/connecting" class="list-group-item list-group-item-action ">Connect to CHTC</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-files-computer" class="list-group-item list-group-item-action ">Transfer Files between CHTC and your Computer</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-files-computer" class="list-group-item list-group-item-action ">Transfer Files between CHTC and your Computer</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/configure-ssh" class="list-group-item list-group-item-action ">Automate CHTC Log In</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/configure-ssh" class="list-group-item list-group-item-action ">Automate CHTC Log In</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-data-researchdrive" class="list-group-item list-group-item-action ">Transfer Files Between CHTC and ResearchDrive</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-data-researchdrive" class="list-group-item list-group-item-action ">Transfer Files Between CHTC and ResearchDrive</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/github-remote-access" class="list-group-item list-group-item-action ">Access a Private GitHub Repository Remotely</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/github-remote-access" class="list-group-item list-group-item-action ">Access a Private GitHub Repository Remotely</a>
+
 
 				</div>
 			</div>
@@ -313,7 +325,9 @@ <h4 class="mt-0 mx-auto">Basics and Policies</h4>
 						<h4 class="mt-0 mx-auto">Job Submission</h4>
 					</div>
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-job-submission" class="list-group-item list-group-item-action ">Submitting and Managing Jobs Using SLURM</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-job-submission" class="list-group-item list-group-item-action ">Submitting and Managing Jobs Using SLURM</a>
+
 
 				</div>
 			</div>
@@ -337,17 +351,29 @@ <h4 class="mt-0 mx-auto">Job Submission</h4>
 						<h4 class="mt-0 mx-auto">Software Solutions</h4>
 					</div>
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-software" class="list-group-item list-group-item-action ">Use Software on the HPC Cluster</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-software" class="list-group-item list-group-item-action ">Use Software on the HPC Cluster</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-setup" class="list-group-item list-group-item-action ">Set Up Spack on HPC</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-setup" class="list-group-item list-group-item-action ">Set Up Spack on HPC</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-install" class="list-group-item list-group-item-action ">Install Software Using Spack</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-install" class="list-group-item list-group-item-action ">Install Software Using Spack</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-modules" class="list-group-item list-group-item-action ">Create Custom Modules Using Spack</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/hpc-spack-modules" class="list-group-item list-group-item-action ">Create Custom Modules Using Spack</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-hpc" class="list-group-item list-group-item-action ">Using Apptainer Containers on HPC</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-hpc" class="list-group-item list-group-item-action ">Using Apptainer Containers on HPC</a>
+
 
-					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-build" class="list-group-item list-group-item-action ">Building an Apptainer Container</a>
+
+						<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-build" class="list-group-item list-group-item-action ">Building an Apptainer Container</a>
+
 
 				</div>
 			</div>

diff --git a/preview-aowen-software-overview/uw-research-computing/htc/guides.html b/preview-aowen-software-overview/uw-research-computing/htc/guides.html
@@ -282,23 +282,41 @@ <h2 id="htc-documentation" class="">HTC Documentation</h2>
 					<h4 class="mt-0 mx-auto">Basics and Policies</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htc-overview" class="list-group-item list-group-item-action ">HTC System Overview</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htc-overview" class="list-group-item list-group-item-action ">HTC System Overview</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/noShow-use-submit-node" class="list-group-item list-group-item-action ">Using CHTC's HTC Submit Nodes</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/noShow-use-submit-node" class="list-group-item list-group-item-action ">Using CHTC's HTC Submit Nodes</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/connecting" class="list-group-item list-group-item-action ">Connect to CHTC</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/connecting" class="list-group-item list-group-item-action ">Connect to CHTC</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-files-computer" class="list-group-item list-group-item-action ">Transfer Files between CHTC and your Computer</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-files-computer" class="list-group-item list-group-item-action ">Transfer Files between CHTC and your Computer</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/configure-ssh" class="list-group-item list-group-item-action ">Automate CHTC Log In</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/configure-ssh" class="list-group-item list-group-item-action ">Automate CHTC Log In</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-data-researchdrive" class="list-group-item list-group-item-action ">Transfer Files Between CHTC and ResearchDrive</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/transfer-data-researchdrive" class="list-group-item list-group-item-action ">Transfer Files Between CHTC and ResearchDrive</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/globus" class="list-group-item list-group-item-action ">Use Globus to Transfer Files to and from CHTC</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/globus" class="list-group-item list-group-item-action ">Use Globus to Transfer Files to and from CHTC</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/github-remote-access" class="list-group-item list-group-item-action ">Access a Private GitHub Repository Remotely</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/github-remote-access" class="list-group-item list-group-item-action ">Access a Private GitHub Repository Remotely</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/check-quota" class="list-group-item list-group-item-action ">Check Disk Quota and Usage</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/check-quota" class="list-group-item list-group-item-action ">Check Disk Quota and Usage</a>
+
 
 			</div>
 		</div>
@@ -319,15 +337,25 @@ <h4 class="mt-0 mx-auto">Basics and Policies</h4>
 					<h4 class="mt-0 mx-auto">Job Submission</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/condor_q" class="list-group-item list-group-item-action ">Learn About Your Jobs Using condor_q</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/condor_q" class="list-group-item list-group-item-action ">Learn About Your Jobs Using condor_q</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htcondor-job-submission" class="list-group-item list-group-item-action ">Practice: Submit HTC Jobs using HTCondor</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htcondor-job-submission" class="list-group-item list-group-item-action ">Practice: Submit HTC Jobs using HTCondor</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/multiple-jobs" class="list-group-item list-group-item-action ">Submitting Multiple Jobs Using HTCondor</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/multiple-jobs" class="list-group-item list-group-item-action ">Submitting Multiple Jobs Using HTCondor</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/dagman-workflows" class="list-group-item list-group-item-action ">Workflows with HTCondor's DAGMan</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/dagman-workflows" class="list-group-item list-group-item-action ">Workflows with HTCondor's DAGMan</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/multiple-job-dirs" class="list-group-item list-group-item-action ">Submitting Multiple Jobs in Different Directories</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/multiple-job-dirs" class="list-group-item list-group-item-action ">Submitting Multiple Jobs in Different Directories</a>
+
 
 			</div>
 		</div>
@@ -348,11 +376,17 @@ <h4 class="mt-0 mx-auto">Job Submission</h4>
 					<h4 class="mt-0 mx-auto">Handling Data in Jobs</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-availability" class="list-group-item list-group-item-action ">Transfer Small Input and Output</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-availability" class="list-group-item list-group-item-action ">Transfer Small Input and Output</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-avail-squid" class="list-group-item list-group-item-action ">Transfer Large Input Files Via Squid</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-avail-squid" class="list-group-item list-group-item-action ">Transfer Large Input Files Via Squid</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-avail-largedata" class="list-group-item list-group-item-action ">Use Large Input and Output Files Via Staging</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/file-avail-largedata" class="list-group-item list-group-item-action ">Use Large Input and Output Files Via Staging</a>
+
 
 			</div>
 		</div>
@@ -373,21 +407,37 @@ <h4 class="mt-0 mx-auto">Handling Data in Jobs</h4>
 					<h4 class="mt-0 mx-auto">Software Solutions</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/software-overview-htc" class="list-group-item list-group-item-action ">Overview: How to Use Software</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/software-overview-htc" class="list-group-item list-group-item-action "><b>Overview: How to Use Software</b></a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/inter-submit" class="list-group-item list-group-item-action ">Compile Software in an Interactive Job</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/inter-submit" class="list-group-item list-group-item-action ">Compile Software in an Interactive Job</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-jobs" class="list-group-item list-group-item-action ">Use Software Installed in a Docker Container</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-jobs" class="list-group-item list-group-item-action ">Use Software Installed in a Docker Container</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-build" class="list-group-item list-group-item-action ">Build a Docker Container Image</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-build" class="list-group-item list-group-item-action ">Build a Docker Container Image</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/licensed-software" class="list-group-item list-group-item-action ">Use Licensed Software</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/licensed-software" class="list-group-item list-group-item-action ">Use Licensed Software</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-htc" class="list-group-item list-group-item-action ">Use Apptainer Containers</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-htc" class="list-group-item list-group-item-action ">Use Apptainer Containers</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-build" class="list-group-item list-group-item-action ">Building an Apptainer Container</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-build" class="list-group-item list-group-item-action ">Building an Apptainer Container</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-htc-advanced-example" class="list-group-item list-group-item-action ">Advanced Apptainer Example - SUMO</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/apptainer-htc-advanced-example" class="list-group-item list-group-item-action ">Advanced Apptainer Example - SUMO</a>
+
 
 			</div>
 		</div>
@@ -408,19 +458,33 @@ <h4 class="mt-0 mx-auto">Software Solutions</h4>
 					<h4 class="mt-0 mx-auto">Special Use Cases</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/gpu-jobs" class="list-group-item list-group-item-action ">Use GPUs</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/gpu-jobs" class="list-group-item list-group-item-action ">Use GPUs</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/machine-learning-htc" class="list-group-item list-group-item-action ">Run Machine Learning Jobs</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/machine-learning-htc" class="list-group-item list-group-item-action ">Run Machine Learning Jobs</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/scaling-htc" class="list-group-item list-group-item-action ">Scale Beyond Local HTC Capacity</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/scaling-htc" class="list-group-item list-group-item-action ">Scale Beyond Local HTC Capacity</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/checkpointing" class="list-group-item list-group-item-action ">Checkpointing Jobs</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/checkpointing" class="list-group-item list-group-item-action ">Checkpointing Jobs</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/high-memory-jobs" class="list-group-item list-group-item-action ">Submit High Memory Jobs</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/high-memory-jobs" class="list-group-item list-group-item-action ">Submit High Memory Jobs</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htc-modules" class="list-group-item list-group-item-action ">Use Software Available in Modules</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/htc-modules" class="list-group-item list-group-item-action ">Use Software Available in Modules</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/os-transition-htc" class="list-group-item list-group-item-action ">Use Custom Linux Versions in CHTC</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/os-transition-htc" class="list-group-item list-group-item-action ">Use Custom Linux Versions in CHTC</a>
+
 
 			</div>
 		</div>
@@ -441,9 +505,13 @@ <h4 class="mt-0 mx-auto">Special Use Cases</h4>
 					<h4 class="mt-0 mx-auto">Troubleshooting</h4>
 				</div>
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/dos-unix" class="list-group-item list-group-item-action ">Windows / Linux Incompatibility</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/dos-unix" class="list-group-item list-group-item-action ">Windows / Linux Incompatibility</a>
+
 
-				<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-test" class="list-group-item list-group-item-action ">Explore and Test Docker Containers</a>
+
+					<a href="/web-preview/preview-aowen-software-overview/uw-research-computing/docker-test" class="list-group-item list-group-item-action ">Explore and Test Docker Containers</a>
+
 
 			</div>
 		</div>