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Adjust to brave new PAT world (jennybc#183)
* We have to address credentials up front now * Rename file * Major rewrite re: PAT * Refresh chapter on SSH keys * Refresh initial test of local repo <--> GitHub * Clean up some cross-linkages and cruft * Modify this intro reflect new order * Delete this and send people to main test exercise * File no longer needed * More tweaks / merging details from elsewhere * Refresh the RStudio chapter * Refresh RStudio <--> Git executable * Refresh troubleshooting
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