Another attempt at gathering dependencies

.github/workflows/deploy.yml

@@ -51,6 +51,18 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: '4.3.2'
+      # Capture dependencies
+      - name: Capture dependencies
+        run: |
+          # Install packages
+          source("global.R")
+          # Install renv
+          install.packages("renv")
+          # Create lockfile
+          renv::snapshot()
+        shell: Rscript {0}
+      # Setup and install dependencies using renv
+      - uses: r-lib/actions/setup-renv@v2
       # Deploy using rsconnect
       - name: Deploy
         run: |

global.R

@@ -1,49 +1,65 @@
 ###### MetaInsight ######
 
+LoadOrInstall <- function(package_name) {
+  tryCatch(
+    {
+      library(package_name)
+    },
+    error = function(exptn) {
+      if (class(exptn)[1] == "packageNotFoundError") {
+        install.packages(package_name)
+        library(package_name)
+      } else {
+        stop(exptn)
+      }
+    }
+  )
+}
+
 # plyr is recommended to be loaded before dplyr for better performance
-library(plyr)
+LoadOrInstall(plyr)
 
-library(bnma)
-library(BUGSnet)
-library(combinat)
-library(cookies)
-library(cowplot)
-library(data.table)
-library(data.tree)
-library(dplyr)
-library(future)
-library(jsonlite)
-library(knitr)
-library(gemtc)
-library(ggiraphExtra)
-library(ggplot2)
-library(ggrepel)
-library(glue)
-library(lubridate)
-library(magick)
-library(matrixcalc)
-library(MCMCvis)
-library(metafor)
-library(mvtnorm)
-library(netmeta)
-library(patchwork)
-library(plotly)
-library(plotrix)
-library(promises)
-library(R.utils)
-library(R6)
-library(rio)
-library(shiny)
-library(shinyalert)
-library(shinyAce)
-library(shinyBS)
-library(shinycssloaders)
-library(shinydashboard)
-library(shinyjs)
-library(shinyWidgets)
-library(stringr)
-library(rmarkdown)
-library(tidyr)
+LoadOrInstall(bnma)
+LoadOrInstall(BUGSnet)
+LoadOrInstall(combinat)
+LoadOrInstall(cookies)
+LoadOrInstall(cowplot)
+LoadOrInstall(data.table)
+LoadOrInstall(data.tree)
+LoadOrInstall(dplyr)
+LoadOrInstall(future)
+LoadOrInstall(jsonlite)
+LoadOrInstall(knitr)
+LoadOrInstall(gemtc)
+LoadOrInstall(ggiraphExtra)
+LoadOrInstall(ggplot2)
+LoadOrInstall(ggrepel)
+LoadOrInstall(glue)
+LoadOrInstall(lubridate)
+LoadOrInstall(magick)
+LoadOrInstall(matrixcalc)
+LoadOrInstall(MCMCvis)
+LoadOrInstall(metafor)
+LoadOrInstall(mvtnorm)
+LoadOrInstall(netmeta)
+LoadOrInstall(patchwork)
+LoadOrInstall(plotly)
+LoadOrInstall(plotrix)
+LoadOrInstall(promises)
+LoadOrInstall(R.utils)
+LoadOrInstall(R6)
+LoadOrInstall(rio)
+LoadOrInstall(shiny)
+LoadOrInstall(shinyalert)
+LoadOrInstall(shinyAce)
+LoadOrInstall(shinyBS)
+LoadOrInstall(shinycssloaders)
+LoadOrInstall(shinydashboard)
+LoadOrInstall(shinyjs)
+LoadOrInstall(shinyWidgets)
+LoadOrInstall(stringr)
+LoadOrInstall(rmarkdown)
+LoadOrInstall(tidyr)
 
 R.utils::sourceDirectory(path = "R", modifiedOnly = FALSE)